4ALQA

X-ray photoreduction of polysaccharide monooxygenase cbm33
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
166
structure length
166
Chain Sequence
HGYVASPGSRAFFGSSAGGNLNTNVGRAQWEPQSIEAPKNTFITGKLASAGVSGFEPLDEQTATRWHKTNITTGPLDITWNLTAQHRTASWDYYITKNGWNPNQPLDIKNFDKIASIDGKQEVPNKVVKQTINIPTDRKGYHVIYAVWGIGDTVNAFYQAIDVNIQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chitin-binding protein
source organism Enterococcus faecalis
publication title Structural and Electronic Snapshots During the Transition from a Cu(II) to Cu(I) Metal Center of a Lytic Polysaccharide Monooxygenase by X-Ray Photo-Reduction.
pubmed doi rcsb
molecule keywords CHITIN BINDING PROTEIN
total genus 48
structure length 166
sequence length 166
ec nomenclature ec 1.14.99.53: Lytic chitin monooxygenase.
pdb deposition date 2012-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03067 LPMO_10 Lytic polysaccharide mono-oxygenase, cellulose-degrading
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.50.50 Mainly Beta Distorted Sandwich Coagulation Factor XIII; Chain A, domain 1 chitin-binding protein cbp21 4alqA00
4ALQA 2BENA 4ALTA 5FJQA 2BEMA 4ALEA 2YOYA 3UAMA 2YOWA 5AA7A 2YOXA 5IJUA 4GBOA 4ALSA 4A02A 4ALCA 4OY8A 5FTZA 4OY6A 4ALRA 4OY7A 2LHSA 2XWXA
chains in the Genus database with same CATH superfamily
4ALTA 1AJWA 2JHUA 4JVFB 3UAMA 5ACGA 1DOAB 2YOWA 5HNOA 2JHZA 2YOXA 4GOJC 4LN0A 4RE1A 4JVBB 2JHYA 5FTZA 2JHVA 1KMTA 5TB5B 2YETA 1FSOA 5FOHA 3RBQA 2BXWA 1FT0A 5FJQA 4ALEA 5ACIA 5DQEA 4GOKC 5E8FA 5F2UA 4QI8A 4FMRA 5AA7A 5EMWA 5IJUA 1FSTA 4A02A 1GDFA 4F38B 4OY8A 4D7VA 5E80A 2JHXA 4MAIA 4OY6A 4ALRA 3ZUDA 5ACFA 4JV8B 4JHPB 2BEMA 1HH4D 4B5QA 3EJAA 4JV6B 1KSGB 4EIRA 1FT3A 3T5GB 2JHTA 3KYSA 5EMVA 4MAHA 4ALCA 3JUAA 3EIIA 2VTCA 4OY7A 2LHSA 5HGUA 3T5IA 2JI0A 2XWXA 4EISB 4ALQA 2BENA 1DS6B 3L15A 5L7KA 1KSJB 2YOYA 5HNPA 4EISA 5TARB 1RHOA 2JHWA 4GBOA 4ALSA 3GQQA 2R5OA 1KSHB 5DQ8A 4D7UA 1QVYA 2JHSA 5ACJA 5ACHA
chains in the Genus database with same CATH topology
4ALQA 2BENA 4ALTA 5FJQA 2BEMA 4ALEA 2YOYA 3UAMA 2YOWA 5AA7A 2YOXA 5IJUA 4GBOA 4ALSA 4A02A 4ALCA 4OY8A 5FTZA 4OY6A 4ALRA 4OY7A 2LHSA 2XWXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ALQ A;  2BEN A;  4ALT A;  5FJQ A;  2BEM A;  4ALE A;  2YOY A;  3UAM A;  2YOW A;  5AA7 A;  2YOX A;  5IJU A;  4GBO A;  4ALS A;  4A02 A;  4ALC A;  4OY8 A;  5FTZ A;  4OY6 A;  4ALR A;  4OY7 A;  2LHS A;  2XWX A; 
#chains in the Genus database with same CATH topology
 4ALT A;  1AJW A;  2JHU A;  4JVF B;  3UAM A;  5ACG A;  1DOA B;  2YOW A;  5HNO A;  2JHZ A;  2YOX A;  4GOJ C;  4LN0 A;  4RE1 A;  4JVB B;  2JHY A;  5FTZ A;  2JHV A;  1KMT A;  5TB5 B;  2YET A;  1FSO A;  5FOH A;  3RBQ A;  2BXW A;  1FT0 A;  5FJQ A;  4ALE A;  5ACI A;  5DQE A;  4GOK C;  5E8F A;  5F2U A;  4QI8 A;  4FMR A;  5AA7 A;  5EMW A;  5IJU A;  1FST A;  4A02 A;  1GDF A;  4F38 B;  4OY8 A;  4D7V A;  5E80 A;  2JHX A;  4MAI A;  4OY6 A;  4ALR A;  3ZUD A;  5ACF A;  4JV8 B;  4JHP B;  2BEM A;  1HH4 D;  4B5Q A;  3EJA A;  4JV6 B;  1KSG B;  4EIR A;  1FT3 A;  3T5G B;  2JHT A;  3KYS A;  5EMV A;  4MAH A;  4ALC A;  3JUA A;  3EII A;  2VTC A;  4OY7 A;  2LHS A;  5HGU A;  3T5I A;  2JI0 A;  2XWX A;  4EIS B;  4ALQ A;  2BEN A;  1DS6 B;  3L15 A;  5L7K A;  1KSJ B;  2YOY A;  5HNP A;  4EIS A;  5TAR B;  1RHO A;  2JHW A;  4GBO A;  4ALS A;  3GQQ A;  2R5O A;  1KSH B;  5DQ8 A;  4D7U A;  1QVY A;  2JHS A;  5ACJ A;  5ACH A; 
#chains in the Genus database with same CATH homology
 4ALQ A;  2BEN A;  4ALT A;  5FJQ A;  2BEM A;  4ALE A;  2YOY A;  3UAM A;  2YOW A;  5AA7 A;  2YOX A;  5IJU A;  4GBO A;  4ALS A;  4A02 A;  4ALC A;  4OY8 A;  5FTZ A;  4OY6 A;  4ALR A;  4OY7 A;  2LHS A;  2XWX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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