4ALQA

X-ray photoreduction of polysaccharide monooxygenase cbm33
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
166
structure length
166
Chain Sequence
HGYVASPGSRAFFGSSAGGNLNTNVGRAQWEPQSIEAPKNTFITGKLASAGVSGFEPLDEQTATRWHKTNITTGPLDITWNLTAQHRTASWDYYITKNGWNPNQPLDIKNFDKIASIDGKQEVPNKVVKQTINIPTDRKGYHVIYAVWGIGDTVNAFYQAIDVNIQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and Electronic Snapshots During the Transition from a Cu(II) to Cu(I) Metal Center of a Lytic Polysaccharide Monooxygenase by X-Ray Photo-Reduction.
pubmed doi rcsb
molecule tags Chitin-binding protein
source organism Enterococcus faecalis
molecule keywords CHITIN BINDING PROTEIN
total genus 48
structure length 166
sequence length 166
ec nomenclature ec 1.14.99.53: Lytic chitin monooxygenase.
pdb deposition date 2012-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03067 LPMO_10 Lytic polysaccharide mono-oxygenase, cellulose-degrading
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.50.50 Mainly Beta Distorted Sandwich Coagulation Factor XIII; Chain A, domain 1 chitin-binding protein cbp21 4alqA00
4OY8A 2XWXA 5AA7A 4ALSA 2BEMA 4A02A 5IJUA 5FTZA 4ALTA 2YOWA 2YOYA 5FJQA 4GBOA 4ALEA 2LHSA 2YOXA 3UAMA 4ALRA 4ALQA 4ALCA 4OY7A 2BENA 4OY6A
chains in the Genus database with same CATH superfamily
5HNOA 3GQQA 3KYSA 4GOJC 1KSGB 5EMVA 3RBQA 2JHXA 5DQ8A 1QVYA 4A02A 2JHTA 4ALTA 2YOWA 2VTCA 3L15A 4EISA 3T5IA 3JUAA 4LN0A 3UAMA 1AJWA 3EJAA 1GDFA 4ALQA 5ACFA 4OY6A 5F2UA 1FSOA 2XWXA 5TARB 4B5QA 5L7KA 5HGUA 4JV6B 4D7VA 3ZUDA 2JHVA 5FTZA 2BXWA 5ACIA 5DQEA 2R5OA 4GBOA 2LHSA 1KMTA 2YETA 4ALRA 5ACGA 1DOAB 4ALCA 2BENA 5ACJA 5TB5B 4FMRA 2JHUA 3EIIA 4JVFB 2JHWA 4EISB 2JI0A 2JHSA 1FT3A 2JHYA 1HH4D 2YOYA 4JV8B 5FJQA 4EIRA 5FOHA 4F38B 4ALEA 4QI8A 2YOXA 4MAHA 1KSHB 4JVBB 1KSJB 4OY7A 4OY8A 5AA7A 4MAIA 4D7UA 1RHOA 5EMWA 2JHZA 4ALSA 2BEMA 4GOKC 4JHPB 1FSTA 5E80A 5IJUA 5HNPA 5E8FA 3T5GB 1FT0A 5ACHA 1DS6B 4RE1A
chains in the Genus database with same CATH topology
4OY8A 2XWXA 5AA7A 4ALSA 2BEMA 4A02A 5IJUA 5FTZA 4ALTA 2YOWA 2YOYA 5FJQA 4GBOA 4ALEA 2LHSA 2YOXA 3UAMA 4ALRA 4ALQA 4ALCA 4OY7A 2BENA 4OY6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OY8 A;  2XWX A;  5AA7 A;  4ALS A;  2BEM A;  4A02 A;  5IJU A;  5FTZ A;  4ALT A;  2YOW A;  2YOY A;  5FJQ A;  4GBO A;  4ALE A;  2LHS A;  2YOX A;  3UAM A;  4ALR A;  4ALQ A;  4ALC A;  4OY7 A;  2BEN A;  4OY6 A; 
#chains in the Genus database with same CATH topology
 5HNO A;  3GQQ A;  3KYS A;  4GOJ C;  1KSG B;  5EMV A;  3RBQ A;  2JHX A;  5DQ8 A;  1QVY A;  4A02 A;  2JHT A;  4ALT A;  2YOW A;  2VTC A;  3L15 A;  4EIS A;  3T5I A;  3JUA A;  4LN0 A;  3UAM A;  1AJW A;  3EJA A;  1GDF A;  4ALQ A;  5ACF A;  4OY6 A;  5F2U A;  1FSO A;  2XWX A;  5TAR B;  4B5Q A;  5L7K A;  5HGU A;  4JV6 B;  4D7V A;  3ZUD A;  2JHV A;  5FTZ A;  2BXW A;  5ACI A;  5DQE A;  2R5O A;  4GBO A;  2LHS A;  1KMT A;  2YET A;  4ALR A;  5ACG A;  1DOA B;  4ALC A;  2BEN A;  5ACJ A;  5TB5 B;  4FMR A;  2JHU A;  3EII A;  4JVF B;  2JHW A;  4EIS B;  2JI0 A;  2JHS A;  1FT3 A;  2JHY A;  1HH4 D;  2YOY A;  4JV8 B;  5FJQ A;  4EIR A;  5FOH A;  4F38 B;  4ALE A;  4QI8 A;  2YOX A;  4MAH A;  1KSH B;  4JVB B;  1KSJ B;  4OY7 A;  4OY8 A;  5AA7 A;  4MAI A;  4D7U A;  1RHO A;  5EMW A;  2JHZ A;  4ALS A;  2BEM A;  4GOK C;  4JHP B;  1FST A;  5E80 A;  5IJU A;  5HNP A;  5E8F A;  3T5G B;  1FT0 A;  5ACH A;  1DS6 B;  4RE1 A; 
#chains in the Genus database with same CATH homology
 4OY8 A;  2XWX A;  5AA7 A;  4ALS A;  2BEM A;  4A02 A;  5IJU A;  5FTZ A;  4ALT A;  2YOW A;  2YOY A;  5FJQ A;  4GBO A;  4ALE A;  2LHS A;  2YOX A;  3UAM A;  4ALR A;  4ALQ A;  4ALC A;  4OY7 A;  2BEN A;  4OY6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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