4ALSA

X-ray photoreduction of polysaccharide monooxygenase cbm33
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
166
structure length
166
Chain Sequence
HGYVASPGSRAFFGSSAGGNLNTNVGRAQWEPQSIEAPKNTFITGKLASAGVSGFEPLDEQTATRWHKTNITTGPLDITWNLTAQHRTASWDYYITKNGWNPNQPLDIKNFDKIASIDGKQEVPNKVVKQTINIPTDRKGYHVIYAVWGIGDTVNAFYQAIDVNIQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV4 (57-60)TI1 (59-62)TIV5 (66-69)S2 (64-66)TIV3 (50-53)3H2 (54-57)S1 (30-34)S7 (155-162)TIV1 (33-36)TVIII1 (32-35)AH1 (38-42)S6 (139-150)3H1 (44-46)S4 (102-110)TIV2 (46-49)TI2 (60-63)TI7 (163-166)TII1 (71-74)TI4 (75-78)TI6 (129-132)TI'1 (77-80)TI5 (90-93)TII3 (125-128)TII2 (80-83)3H3 (84-87)TVIII3 (110-113)S3 (97-99)3H4 (136-138)TVIII4 (153-156)TVIII2 (48-51)TI3 (74-77)S5 (116-124)Updating...
connected with : NaN
molecule tags Chitin-binding protein
source organism Enterococcus faecalis
publication title Structural and Electronic Snapshots During the Transition from a Cu(II) to Cu(I) Metal Center of a Lytic Polysaccharide Monooxygenase by X-Ray Photo-Reduction.
pubmed doi rcsb
molecule keywords CHITIN BINDING PROTEIN
total genus 48
structure length 166
sequence length 166
ec nomenclature ec 1.14.99.53: Lytic chitin monooxygenase.
pdb deposition date 2012-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03067 LPMO_10 Lytic polysaccharide mono-oxygenase, cellulose-degrading
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.50.50 Mainly Beta Distorted Sandwich Coagulation Factor XIII; Chain A, domain 1 chitin-binding protein cbp21 4alsA00
5FJQA 4ALEA 2YOYA 4OY8A 3UAMA 4ALTA 4ALRA 2YOXA 5AA7A 4OY7A 2LHSA 5FTZA 2YOWA 2BEMA 4ALSA 4ALCA 2XWXA 5IJUA 2BENA 4OY6A 4A02A 4GBOA 4ALQA
chains in the Genus database with same CATH superfamily
3T5GB 3L15A 5E80A 5F2UA 4OY8A 2JHVA 4JVBB 4ALTA 2JI0A 4ALRA 2YOXA 1KMTA 4OY7A 3EJAA 2BEMA 1GDFA 4FMRA 3RBQA 2BENA 2JHUA 5HGUA 3GQQA 4A02A 1RHOA 5TB5B 4JVFB 5TARB 3ZUDA 4ALEA 1QVYA 5L7KA 1FT0A 1FT3A 4LN0A 5DQ8A 1HH4D 5AA7A 4JHPB 5ACJA 2JHYA 5ACFA 4F38B 4MAHA 4MAIA 5HNOA 2YETA 1FSOA 1FSTA 4ALQA 5ACIA 2R5OA 2BXWA 3JUAA 5ACGA 2JHSA 2VTCA 2JHTA 5EMWA 3KYSA 3T5IA 5E8FA 1DS6B 2LHSA 5FTZA 2YOWA 2JHWA 4OY6A 4GOKC 5EMVA 1KSHB 4JV8B 4GBOA 4RE1A 5FJQA 2JHXA 2YOYA 4GOJC 4D7VA 3UAMA 4B5QA 5HNPA 2JHZA 1AJWA 3EIIA 5FOHA 4D7UA 4EISB 4ALSA 4ALCA 2XWXA 5IJUA 1KSJB 4QI8A 4JV6B 5DQEA 4EIRA 5ACHA 1DOAB 1KSGB 4EISA
chains in the Genus database with same CATH topology
5FJQA 4ALEA 2YOYA 4OY8A 3UAMA 4ALTA 4ALRA 2YOXA 5AA7A 4OY7A 2LHSA 5FTZA 2YOWA 2BEMA 4ALSA 4ALCA 2XWXA 5IJUA 2BENA 4OY6A 4A02A 4GBOA 4ALQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FJQ A;  4ALE A;  2YOY A;  4OY8 A;  3UAM A;  4ALT A;  4ALR A;  2YOX A;  5AA7 A;  4OY7 A;  2LHS A;  5FTZ A;  2YOW A;  2BEM A;  4ALS A;  4ALC A;  2XWX A;  5IJU A;  2BEN A;  4OY6 A;  4A02 A;  4GBO A;  4ALQ A; 
#chains in the Genus database with same CATH topology
 3T5G B;  3L15 A;  5E80 A;  5F2U A;  4OY8 A;  2JHV A;  4JVB B;  4ALT A;  2JI0 A;  4ALR A;  2YOX A;  1KMT A;  4OY7 A;  3EJA A;  2BEM A;  1GDF A;  4FMR A;  3RBQ A;  2BEN A;  2JHU A;  5HGU A;  3GQQ A;  4A02 A;  1RHO A;  5TB5 B;  4JVF B;  5TAR B;  3ZUD A;  4ALE A;  1QVY A;  5L7K A;  1FT0 A;  1FT3 A;  4LN0 A;  5DQ8 A;  1HH4 D;  5AA7 A;  4JHP B;  5ACJ A;  2JHY A;  5ACF A;  4F38 B;  4MAH A;  4MAI A;  5HNO A;  2YET A;  1FSO A;  1FST A;  4ALQ A;  5ACI A;  2R5O A;  2BXW A;  3JUA A;  5ACG A;  2JHS A;  2VTC A;  2JHT A;  5EMW A;  3KYS A;  3T5I A;  5E8F A;  1DS6 B;  2LHS A;  5FTZ A;  2YOW A;  2JHW A;  4OY6 A;  4GOK C;  5EMV A;  1KSH B;  4JV8 B;  4GBO A;  4RE1 A;  5FJQ A;  2JHX A;  2YOY A;  4GOJ C;  4D7V A;  3UAM A;  4B5Q A;  5HNP A;  2JHZ A;  1AJW A;  3EII A;  5FOH A;  4D7U A;  4EIS B;  4ALS A;  4ALC A;  2XWX A;  5IJU A;  1KSJ B;  4QI8 A;  4JV6 B;  5DQE A;  4EIR A;  5ACH A;  1DOA B;  1KSG B;  4EIS A; 
#chains in the Genus database with same CATH homology
 5FJQ A;  4ALE A;  2YOY A;  4OY8 A;  3UAM A;  4ALT A;  4ALR A;  2YOX A;  5AA7 A;  4OY7 A;  2LHS A;  5FTZ A;  2YOW A;  2BEM A;  4ALS A;  4ALC A;  2XWX A;  5IJU A;  2BEN A;  4OY6 A;  4A02 A;  4GBO A;  4ALQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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