4BNBA

Nitroreductase cind from lactococcus lactis in complex with 4- nitroquinoline 1-oxide
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
201
structure length
189
Chain Sequence
SFIKSLENRRTIYALGRNVQDEEKVIETIKEAVRFSPTAFNSQTGRLLILTGDAQDKLWDEIVAPELKAAMEAAKLDGFKAAFGTILFFEDQAVVKNLQEQFALYADNFPVWSEQGSGIISVNVWTALAELGLGANLQHYNPLIDEAVAKEWNLPESWKLRGQLVFGSIEAPAGEKTFMDDADRFIVAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Nitroreductase Cind from Lactococcus Lactis in Complex with 2 4-Nitroquinoline 1-Oxidenone
rcsb
molecule tags Oxidoreductase
source organism Lactococcus lactis
molecule keywords COPPER INDUCED NITROREDUCTASE D
total genus 56
structure length 189
sequence length 201
ec nomenclature
pdb deposition date 2013-05-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00881 Nitroreductase Nitroreductase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 4bnbA00
2B67A 4G8SA 3GH8A 3X21A 5KO8A 1NOXA 3BEMA 3E10A 3TNZA 2H0UA 3QDLA 1DS7A 3GFAA 3HJ9A 1OO5A 5HDJA 3GR3A 1ZCHA 1KQBA 3KWKA 1V5YA 3N2SA 3GB5A 3GE6A 3KOQA 5J6CA 5KO7A 1KQCA 2HAYA 1ICUA 3M5KA 1OO6A 2WZVA 4BNBA 2WQFA 1OONA 2WZWA 3BM2A 3GE5A 4DN2A 3OF4A 3EO7A 1OOQA 1V5ZA 3HZNA 1KQDA 2R01A 1VFRA 4BN8A 4QLYA 3GAGA 4XOOA 3EK3A 3X22A 1VKWA 3EO8A 5KRDA 3GFDA 3G14A 4EO3A 1YWQA 3EOFA 2BKJA 4TTBA 3PXVA 1YKIA 4TTCA 4BN9A 4BN6A 1BKJA 5HEIA 2IFAA 4BN7A 1ICRA 2ISLA 1NECA 4XOQA 2I7HA 1IDTA 1YLUA 3TO0A 4XOMA 3K6HA 1YLRA 3GBHA 3E39A 3HOIA 2ISKA 4QLXA 3H4OA 3BM1A 4URPA 2FREA 1F5VA 1ICVA 2YMVA 2ISJA
chains in the Genus database with same CATH superfamily
2B67A 4G8SA 3GH8A 3X21A 5KO8A 1NOXA 3BEMA 3E10A 3TNZA 2H0UA 3QDLA 1DS7A 3GFAA 3HJ9A 1OO5A 5HDJA 3GR3A 1ZCHA 1KQBA 3KWKA 1V5YA 3N2SA 3GB5A 3GE6A 3KOQA 5J6CA 5KO7A 1KQCA 2HAYA 1ICUA 3M5KA 1OO6A 2WZVA 4BNBA 2WQFA 1OONA 2WZWA 3BM2A 3GE5A 4DN2A 3OF4A 3EO7A 1OOQA 1V5ZA 3HZNA 1KQDA 2R01A 1VFRA 4BN8A 4QLYA 3GAGA 4XOOA 3EK3A 3X22A 1VKWA 3EO8A 5KRDA 3GFDA 3G14A 4EO3A 1YWQA 3EOFA 2BKJA 4TTBA 3PXVA 1YKIA 4TTCA 4BN9A 4BN6A 1BKJA 5HEIA 2IFAA 4BN7A 1ICRA 2ISLA 1NECA 4XOQA 2I7HA 1IDTA 1J6RA 1YLUA 3TO0A 4XOMA 3K6HA 1YLRA 3GBHA 3E39A 3HOIA 2ISKA 4QLXA 3H4OA 3BM1A 4URPA 2FREA 1F5VA 1ICVA 2YMVA 2ISJA
chains in the Genus database with same CATH topology
2B67A 4G8SA 3GH8A 3X21A 5KO8A 1NOXA 3BEMA 3E10A 3TNZA 2H0UA 3QDLA 1DS7A 3GFAA 3HJ9A 1OO5A 5HDJA 3GR3A 1ZCHA 1KQBA 3KWKA 1V5YA 3N2SA 3GB5A 3GE6A 3KOQA 5J6CA 5KO7A 1KQCA 2HAYA 1ICUA 3M5KA 1OO6A 2WZVA 4BNBA 2WQFA 1OONA 2WZWA 3BM2A 3GE5A 4DN2A 3OF4A 3EO7A 1OOQA 1V5ZA 3HZNA 1KQDA 2R01A 1VFRA 4BN8A 4QLYA 3GAGA 4XOOA 3EK3A 3X22A 1VKWA 3EO8A 5KRDA 3GFDA 3G14A 4EO3A 1YWQA 3EOFA 2BKJA 4TTBA 3PXVA 1YKIA 4TTCA 4BN9A 4BN6A 1BKJA 5HEIA 2IFAA 4BN7A 1ICRA 2ISLA 1NECA 4XOQA 2I7HA 1IDTA 1J6RA 1YLUA 3TO0A 4XOMA 3K6HA 1YLRA 3GBHA 3E39A 3HOIA 2ISKA 4QLXA 3H4OA 3BM1A 4URPA 2FREA 1F5VA 1ICVA 2YMVA 2ISJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2B67 A;  4G8S A;  3GH8 A;  3X21 A;  5KO8 A;  1NOX A;  3BEM A;  3E10 A;  3TNZ A;  2H0U A;  3QDL A;  1DS7 A;  3GFA A;  3HJ9 A;  1OO5 A;  5HDJ A;  3GR3 A;  1ZCH A;  1KQB A;  3KWK A;  1V5Y A;  3N2S A;  3GB5 A;  3GE6 A;  3KOQ A;  5J6C A;  5KO7 A;  1KQC A;  2HAY A;  1ICU A;  3M5K A;  1OO6 A;  2WZV A;  4BNB A;  2WQF A;  1OON A;  2WZW A;  3BM2 A;  3GE5 A;  4DN2 A;  3OF4 A;  3EO7 A;  1OOQ A;  1V5Z A;  3HZN A;  1KQD A;  2R01 A;  1VFR A;  4BN8 A;  4QLY A;  3GAG A;  4XOO A;  3EK3 A;  3X22 A;  1VKW A;  3EO8 A;  5KRD A;  3GFD A;  3G14 A;  4EO3 A;  1YWQ A;  3EOF A;  2BKJ A;  4TTB A;  3PXV A;  1YKI A;  4TTC A;  4BN9 A;  4BN6 A;  1BKJ A;  5HEI A;  2IFA A;  4BN7 A;  1ICR A;  2ISL A;  1NEC A;  4XOQ A;  2I7H A;  1IDT A;  1YLU A;  3TO0 A;  4XOM A;  3K6H A;  1YLR A;  3GBH A;  3E39 A;  3HOI A;  2ISK A;  4QLX A;  3H4O A;  3BM1 A;  4URP A;  2FRE A;  1F5V A;  1ICV A;  2YMV A;  2ISJ A; 
#chains in the Genus database with same CATH topology
 2B67 A;  4G8S A;  3GH8 A;  3X21 A;  5KO8 A;  1NOX A;  3BEM A;  3E10 A;  3TNZ A;  2H0U A;  3QDL A;  1DS7 A;  3GFA A;  3HJ9 A;  1OO5 A;  5HDJ A;  3GR3 A;  1ZCH A;  1KQB A;  3KWK A;  1V5Y A;  3N2S A;  3GB5 A;  3GE6 A;  3KOQ A;  5J6C A;  5KO7 A;  1KQC A;  2HAY A;  1ICU A;  3M5K A;  1OO6 A;  2WZV A;  4BNB A;  2WQF A;  1OON A;  2WZW A;  3BM2 A;  3GE5 A;  4DN2 A;  3OF4 A;  3EO7 A;  1OOQ A;  1V5Z A;  3HZN A;  1KQD A;  2R01 A;  1VFR A;  4BN8 A;  4QLY A;  3GAG A;  4XOO A;  3EK3 A;  3X22 A;  1VKW A;  3EO8 A;  5KRD A;  3GFD A;  3G14 A;  4EO3 A;  1YWQ A;  3EOF A;  2BKJ A;  4TTB A;  3PXV A;  1YKI A;  4TTC A;  4BN9 A;  4BN6 A;  1BKJ A;  5HEI A;  2IFA A;  4BN7 A;  1ICR A;  2ISL A;  1NEC A;  4XOQ A;  2I7H A;  1IDT A;  1J6R A;  1YLU A;  3TO0 A;  4XOM A;  3K6H A;  1YLR A;  3GBH A;  3E39 A;  3HOI A;  2ISK A;  4QLX A;  3H4O A;  3BM1 A;  4URP A;  2FRE A;  1F5V A;  1ICV A;  2YMV A;  2ISJ A; 
#chains in the Genus database with same CATH homology
 2B67 A;  4G8S A;  3GH8 A;  3X21 A;  5KO8 A;  1NOX A;  3BEM A;  3E10 A;  3TNZ A;  2H0U A;  3QDL A;  1DS7 A;  3GFA A;  3HJ9 A;  1OO5 A;  5HDJ A;  3GR3 A;  1ZCH A;  1KQB A;  3KWK A;  1V5Y A;  3N2S A;  3GB5 A;  3GE6 A;  3KOQ A;  5J6C A;  5KO7 A;  1KQC A;  2HAY A;  1ICU A;  3M5K A;  1OO6 A;  2WZV A;  4BNB A;  2WQF A;  1OON A;  2WZW A;  3BM2 A;  3GE5 A;  4DN2 A;  3OF4 A;  3EO7 A;  1OOQ A;  1V5Z A;  3HZN A;  1KQD A;  2R01 A;  1VFR A;  4BN8 A;  4QLY A;  3GAG A;  4XOO A;  3EK3 A;  3X22 A;  1VKW A;  3EO8 A;  5KRD A;  3GFD A;  3G14 A;  4EO3 A;  1YWQ A;  3EOF A;  2BKJ A;  4TTB A;  3PXV A;  1YKI A;  4TTC A;  4BN9 A;  4BN6 A;  1BKJ A;  5HEI A;  2IFA A;  4BN7 A;  1ICR A;  2ISL A;  1NEC A;  4XOQ A;  2I7H A;  1IDT A;  1J6R A;  1YLU A;  3TO0 A;  4XOM A;  3K6H A;  1YLR A;  3GBH A;  3E39 A;  3HOI A;  2ISK A;  4QLX A;  3H4O A;  3BM1 A;  4URP A;  2FRE A;  1F5V A;  1ICV A;  2YMV A;  2ISJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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