4CKP | Genus

Total Genus 40

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	40
sequence length	176
structure length	176
Chain Sequence	EEPQTLLETTVMVSTKMPPHEPQVRPLGVYVRTGRGGPNGVTRVVLVRLTDPTDPFFLFELELLEDDYNAFKQHLELLVDFHGFPRYLVGMLRDIADGASAYELSFVLNSAAVGDSNRGTLRVLETTDFKTVEHISLVLLRQGDAGLKRYLAERFQHYEQSFRASEASRAVITAEL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 176 atoms

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176 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein
source organism	Leishmania major
publication title	Structure of the SAS-6 cartwheel hub from Leishmania major. pubmed doi rcsb
molecule keywords	SAS-6
total genus	40
structure length	176
sequence length	176
chains with identical sequence	B, C, D, E, F
ec nomenclature
pdb deposition date	2014-01-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF16531	SAS-6_N	Centriolar protein SAS N-terminal

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.170.210.20	Mainly Beta	Beta Complex	Dna Repair Protein Xrcc4; Chain: A, domain 1	Dna Repair Protein Xrcc4; Chain: A, domain 1	4ckpA00

2Y3WA 2Y3VA 4CKPA 3PYIA 4GEXA 4GFCA 4GFAA 3Q0XA 4CKMA 4GEUA 4CKNA 3Q0YA 4G79A
chains in the Genus database with same CATH superfamily

3PYIA 4GFAA 5CJ0A 4GEUA 1IK9A 4GEXA 1FU1A 3Q0XA 4XA4A 4CKMA 3II6A 3SR2A 4CKPA 5CJ4A 5CHXA 3RWRA 4CKNA 2QM4A 4G79A 2Y3WA 2Y3VA 3RWRD 4GFCA 3SR2C 2R9AA 3MUDA 3Q0YA
chains in the Genus database with same CATH topology

2Y3WA 2Y3VA 4CKPA 3PYIA 4GEXA 4GFCA 4GFAA 3Q0XA 4CKMA 4GEUA 4CKNA 3Q0YA 4G79A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2Y3W A;  2Y3V A;  4CKP A;  3PYI A;  4GEX A;  4GFC A;  4GFA A;  3Q0X A;  4CKM A;  4GEU A;  4CKN A;  3Q0Y A;  4G79 A; 
#chains in the Genus database with same CATH topology
 3PYI A;  4GFA A;  5CJ0 A;  4GEU A;  1IK9 A;  4GEX A;  1FU1 A;  3Q0X A;  4XA4 A;  4CKM A;  3II6 A;  3SR2 A;  4CKP A;  5CJ4 A;  5CHX A;  3RWR A;  4CKN A;  2QM4 A;  4G79 A;  2Y3W A;  2Y3V A;  3RWR D;  4GFC A;  3SR2 C;  2R9A A;  3MUD A;  3Q0Y A; 
#chains in the Genus database with same CATH homology
 2Y3W A;  2Y3V A;  4CKP A;  3PYI A;  4GEX A;  4GFC A;  4GFA A;  3Q0X A;  4CKM A;  4GEU A;  4CKN A;  3Q0Y A;  4G79 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4CKPA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations