4DMO | Genus

Total Genus 74

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	74
sequence length	263
structure length	253
Chain Sequence	MTDFQKQFFARLHIEEKDTVSFEDLSNIMYAMAQTVPFENLNILEKNFKEISKENLKEKILVNNRGGLCYELNPTMYYFLKDSGFDVHLVSGTVYNAANSIWAVDSGHIATVLTHHNELYLIEVGFGSYLPLAPVPFLGEVIHSATGDYRIRKEMTEKGNYILEMRKDDWTLGYAFYIEEVDEEKANTAQKIIVEHEGSPFNKVPLIVKLTEDGHASLTKDSLTVAKNGKKTKETVTDMQYTNLLHSKFGITL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5d03ae96c73955f4e0c6be18/pdb.gz): 985 ms

reading 253 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

253 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 26 ms

Adding embedded #jmolscript: select ({0:252});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structural and Biochemical Characterization of an Active Arylamine N-Acetyltransferase Possessing a Non-canonical Cys-His-Glu Catalytic Triad. pubmed doi rcsb
molecule keywords	N-hydroxyarylamine O-acetyltransferase
molecule tags	Transferase
source organism	Bacillus cereus
total genus	74
structure length	253
sequence length	263
chains with identical sequence	B
ec nomenclature	ec 2.3.1.118: N-hydroxyarylamine O-acetyltransferase.
pdb deposition date	2012-02-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00797	Acetyltransf_2	N-acetyltransferase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.2140.20	Alpha Beta	2-Layer Sandwich	Arylamine N-acetyltransferase fold	Arylamine N-acetyltransferase fold	4dmoA00

4DMOA 3LNBA 2PQTA 2PFRA 2IJAA
chains in the Genus database with same CATH superfamily

1W5RA 4B55A 4DMOA 2PQTA 4NV7A 4NV8A 2PFRA 3D9WA 1GX3A 3LTWA 1W6FA 4C5PA 2VFCA 2VFBA 3LNBA 2BSZA 4GUZA 1W4TA 2IJAA 4BGFA
chains in the Genus database with same CATH topology

4DMOA 3LNBA 2PQTA 2PFRA 2IJAA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4DMO A;  3LNB A;  2PQT A;  2PFR A;  2IJA A; 
#chains in the Genus database with same CATH topology
 1W5R A;  4B55 A;  4DMO A;  2PQT A;  4NV7 A;  4NV8 A;  2PFR A;  3D9W A;  1GX3 A;  3LTW A;  1W6F A;  4C5P A;  2VFC A;  2VFB A;  3LNB A;  2BSZ A;  4GUZ A;  1W4T A;  2IJA A;  4BGF A; 
#chains in the Genus database with same CATH homology
 4DMO A;  3LNB A;  2PQT A;  2PFR A;  2IJA A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4DMOA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations