The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
50
|
sequence length |
241
|
structure length |
234
|
Chain Sequence |
KNVLKAWLVDNTDKIFQLETTRSIDKEIILDRMVAKNPGVRRETMALGIELMEEVVAEALMNGESVNTGLFRGVAQFRGVAKQNAWDAATNSIYVSLTQGKALREAIKDTRVDVLGERPTKFYIGSGQDATTRATDFSATAGRNFTLFGKNLTVAGTDPSVGVTLASAATGTVTKIDNDMIVLNEPSRLIILLPASLEDGEYMLTVTTQYRGGGGALLKTPRSTSHTIYIGGAP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of a hypothetical protein (BVU_2165) from Bacteroides vulgatus ATCC 8482 at 2.25 A resolution
rcsb |
| molecule keywords |
uncharacterized hypothetical protein
|
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Bacteroides vulgatus
|
| total genus |
50
|
| structure length |
234
|
| sequence length |
241
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2012-06-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF14734 | DUF4469 | Domain of unknown function (DUF4469) with IG-like fold |
| A | PF14848 | HU-DNA_bdg | DNA-binding domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Distorted Sandwich | Coagulation Factor XIII; Chain A, domain 1 | Coagulation Factor XIII; Chain A, domain 1 | ||
| Few Secondary Structures | Irregular | HU Protein; Chain A | IHF-like DNA-binding proteins |
#chains in the Genus database with same CATH superfamily 1OWF A; 4FMR A; 2IIE A; 1OUZ A; 1OWG A; 2VTC A; 4EIS B; 2O97 B; 4YF0 A; 4YEX A; 5ACG A; 4YEW C; 1EXE A; 5FOH A; 4DKY A; 4N1V A; 4YFH A; 1RIY A; 2NDP A; 1IHF B; 1HUE A; 1MUL A; 4YEY A; 4YEW A; 2HT0 A; 1P78 A; 5FBM A; 1OWF B; 1OUZ B; 4MAH A; 1B8Z A; 4PT4 A; 5EKA A; 3RHI A; 1OWG B; 3EJA A; 4D7U A; 1WTU A; 4D7V A; 4YFT C; 4EIR A; 5ACH A; 2IIF A; 4MAI A; 3EII A; 4QI8 A; 4YFT A; 5ACF A; 2O97 A; 4P3V A; 2HT0 B; 4EIS A; 3ZUD A; 4QJU A; 4B5Q A; 2YET A; 1P51 A; 2NP2 A; 5ACI A; 1HUU A; 5L8Z A; 1P71 A; 5ACJ A; 4QJN A; 1IHF A; #chains in the Genus database with same CATH topology 4FMR A; 4EIS B; 1FST A; 2JI0 A; 4ALR A; 4YEW C; 1EXE A; 4LN0 A; 1FT3 A; 4YEY A; 4JV6 B; 5DQE A; 1P78 A; 2LHS A; 5L7K A; 2YOW A; 4MAH A; 5E80 A; 1DS6 B; 3RHI A; 1OWG B; 3EJA A; 4D7U A; 1WTU A; 5ACH A; 2JHW A; 1QVY A; 4A02 A; 4MAI A; 5EMW A; 4OY7 A; 4JHP B; 4QI8 A; 2HT0 B; 4ALS A; 2YET A; 4GOJ C; 1HUU A; 1P71 A; 2YOX A; 4ALE A; 4QJN A; 3T5I A; 3KYS A; 1RHO A; 1OWF A; 2O97 B; 1AJW A; 5HNP A; 4N1V A; 4JV8 B; 5FJQ A; 4ALT A; 2NDP A; 1HUE A; 1MUL A; 4OY6 A; 5FBM A; 1KSG B; 4OY8 A; 1OUZ B; 2JHZ A; 1FSO A; 4PT4 A; 5EKA A; 1KSH B; 4D7V A; 4YFT A; 5F2U A; 2JHY A; 3RBQ A; 4ALC A; 2JHU A; 1FT0 A; 1DOA B; 1P51 A; 5ACI A; 2NP2 A; 5L8Z A; 2BXW A; 1IHF A; 2IIE A; 1OWG A; 2JHS A; 4YF0 A; 4JVB B; 5AA7 A; 5ACG A; 3JUA A; 5FOH A; 4DKY A; 5E8F A; 4YFH A; 1RIY A; 1KSJ B; 2BEM A; 2YOY A; 4YEW A; 2HT0 A; 5TB5 B; 3GQQ A; 1B8Z A; 2JHV A; 2IIF A; 5FTZ A; 4RE1 A; 4EIR A; 3L15 A; 5ACF A; 2O97 A; 4P3V A; 4EIS A; 3ZUD A; 4JVF B; 5DQ8 A; 1KMT A; 1OUZ A; 2VTC A; 5TAR B; 2JHX A; 4YEX A; 5HGU A; 1IHF B; 4GOK C; 1OWF B; 2XWX A; 4GBO A; 1GDF A; 2R5O A; 4YFT C; 3UAM A; 3T5G B; 4ALQ A; 3EII A; 1HH4 D; 5IJU A; 2BEN A; 5EMV A; 4QJU A; 4F38 B; 4B5Q A; 2JHT A; 5HNO A; 5ACJ A; #chains in the Genus database with same CATH homology 1OWF A; 4FMR A; 2IIE A; 1OUZ A; 1OWG A; 2VTC A; 4EIS B; 2O97 B; 4YF0 A; 4YEX A; 5HGU A; 5ACG A; 4YEW C; 3JUA A; 5FOH A; 4DKY A; 4N1V A; 4YFH A; 1EXE A; 1RIY A; 2NDP A; 4LN0 A; 1IHF B; 1HUE A; 1MUL A; 4YEY A; 4YEW A; 5DQE A; 1P78 A; 5FBM A; 1OWF B; 2HT0 A; 1OUZ B; 4MAH A; 1B8Z A; 4PT4 A; 5EKA A; 3RHI A; 1OWG B; 3EJA A; 4D7U A; 1WTU A; 4D7V A; 4RE1 A; 4EIR A; 5ACH A; 4YFT C; 2IIF A; 4MAI A; 5EMW A; 3L15 A; 3EII A; 4QI8 A; 4YFT A; 5ACF A; 2O97 A; 4P3V A; 2HT0 B; 5EMV A; 3ZUD A; 4EIS A; 4QJU A; 4B5Q A; 2YET A; 1P51 A; 2NP2 A; 5ACI A; 1HUU A; 5L8Z A; 5DQ8 A; 1P71 A; 5ACJ A; 4QJN A; 3KYS A; 1IHF A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
