4G79 | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	138
structure length	134
Chain Sequence	TSKIALFDQTLIASLLQPLPDFKAYKTKVKLKISEQRNETSGEKELKFEISRSDDFEFLFSETLNNEKYQILARDHDLTVDFDAFPKVIIQHLLCKNTEINIILDAEKNFCSFELFSKTPISKGKIFSIKLHAV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5d001fcc574dc073089c750d/pdb.gz): 1535 ms

reading 134 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

134 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 18 ms

Adding embedded #jmolscript: select ({0:133});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein
source organism	Caenorhabditis elegans
publication title	Caenorhabditis elegans centriolar protein SAS-6 forms a spiral that is consistent with imparting a ninefold symmetry. pubmed doi rcsb
molecule keywords	Spindle assembly abnormal protein 6
total genus	32
structure length	134
sequence length	138
ec nomenclature
pdb deposition date	2012-07-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF16531	SAS-6_N	Centriolar protein SAS N-terminal

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.170.210.20	Mainly Beta	Beta Complex	Dna Repair Protein Xrcc4; Chain: A, domain 1	Dna Repair Protein Xrcc4; Chain: A, domain 1	4g79A00

4GFCA 4CKMA 4CKPA 3Q0YA 4GEUA 4GFAA 2Y3VA 4G79A 3Q0XA 3PYIA 2Y3WA 4CKNA 4GEXA
chains in the Genus database with same CATH superfamily

3Q0YA 3RWRA 4GFAA 4G79A 2Y3WA 3RWRD 4CKPA 2QM4A 4GEUA 5CJ0A 5CJ4A 3SR2C 2R9AA 1FU1A 3MUDA 3SR2A 4CKMA 5CHXA 3PYIA 3II6A 4CKNA 4GFCA 1IK9A 2Y3VA 3Q0XA 4GEXA 4XA4A
chains in the Genus database with same CATH topology

4GFCA 4CKMA 4CKPA 3Q0YA 4GEUA 4GFAA 2Y3VA 4G79A 3Q0XA 3PYIA 2Y3WA 4CKNA 4GEXA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4GFC A;  4CKM A;  4CKP A;  3Q0Y A;  4GEU A;  4GFA A;  2Y3V A;  4G79 A;  3Q0X A;  3PYI A;  2Y3W A;  4CKN A;  4GEX A; 
#chains in the Genus database with same CATH topology
 3Q0Y A;  3RWR A;  4GFA A;  4G79 A;  2Y3W A;  3RWR D;  4CKP A;  2QM4 A;  4GEU A;  5CJ0 A;  5CJ4 A;  3SR2 C;  2R9A A;  1FU1 A;  3MUD A;  3SR2 A;  4CKM A;  5CHX A;  3PYI A;  3II6 A;  4CKN A;  4GFC A;  1IK9 A;  2Y3V A;  3Q0X A;  4GEX A;  4XA4 A; 
#chains in the Genus database with same CATH homology
 4GFC A;  4CKM A;  4CKP A;  3Q0Y A;  4GEU A;  4GFA A;  2Y3V A;  4G79 A;  3Q0X A;  3PYI A;  2Y3W A;  4CKN A;  4GEX A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4G79A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations