4GFA | Genus

Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	35
sequence length	155
structure length	155
Chain Sequence	SKIALFDQTLIASLLQPLSLNQPDFKAYKTKVKLKISEQRNETSGEKELKFEISRSDDFEFLFSETLNNEKYQILARDHDLTVDFDAFPKVIIQHLLCKNTEINIILDAEKNFCSFELFSGKIFSIKLHAVRGDHLISHLLKICSSQAVKLSTFY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 155 atoms

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155 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein
source organism	Caenorhabditis elegans
publication title	Caenorhabditis elegans centriolar protein SAS-6 forms a spiral that is consistent with imparting a ninefold symmetry. pubmed doi rcsb
molecule keywords	Spindle assembly abnormal protein 6
total genus	35
structure length	155
sequence length	155
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2012-08-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF16531	SAS-6_N	Centriolar protein SAS N-terminal

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.170.210.20	Mainly Beta	Beta Complex	Dna Repair Protein Xrcc4; Chain: A, domain 1	Dna Repair Protein Xrcc4; Chain: A, domain 1	4gfaA00

3PYIA 4CKNA 2Y3VA 4GFCA 2Y3WA 4GEXA 4CKMA 4CKPA 4GEUA 4G79A 3Q0XA 4GFAA 3Q0YA
chains in the Genus database with same CATH superfamily

3PYIA 3SR2C 4GFCA 2Y3WA 3RWRA 2R9AA 3SR2A 2Y3VA 1IK9A 3II6A 1FU1A 5CHXA 3Q0XA 4GFAA 3Q0YA 3RWRD 4G79A 2QM4A 5CJ0A 4XA4A 4CKNA 5CJ4A 3MUDA 4GEXA 4CKMA 4CKPA 4GEUA
chains in the Genus database with same CATH topology

3PYIA 4CKNA 2Y3VA 4GFCA 2Y3WA 4GEXA 4CKMA 4CKPA 4GEUA 4G79A 3Q0XA 4GFAA 3Q0YA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3PYI A;  4CKN A;  2Y3V A;  4GFC A;  2Y3W A;  4GEX A;  4CKM A;  4CKP A;  4GEU A;  4G79 A;  3Q0X A;  4GFA A;  3Q0Y A; 
#chains in the Genus database with same CATH topology
 3PYI A;  3SR2 C;  4GFC A;  2Y3W A;  3RWR A;  2R9A A;  3SR2 A;  2Y3V A;  1IK9 A;  3II6 A;  1FU1 A;  5CHX A;  3Q0X A;  4GFA A;  3Q0Y A;  3RWR D;  4G79 A;  2QM4 A;  5CJ0 A;  4XA4 A;  4CKN A;  5CJ4 A;  3MUD A;  4GEX A;  4CKM A;  4CKP A;  4GEU A; 
#chains in the Genus database with same CATH homology
 3PYI A;  4CKN A;  2Y3V A;  4GFC A;  2Y3W A;  4GEX A;  4CKM A;  4CKP A;  4GEU A;  4G79 A;  3Q0X A;  4GFA A;  3Q0Y A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4GFAA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations