4GOJ | Genus

Total Genus 38

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	38
sequence length	179
structure length	161
Chain Sequence	PIGPEDVLGLQRITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKADYSYS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 161 atoms

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161 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Signaling protein
source organism	Mus musculus
publication title	Structural basis for Arl3-specific release of myristoylated ciliary cargo from UNC119. pubmed doi rcsb
molecule keywords	ADP-ribosylation factor-like protein 3
total genus	38
structure length	161
sequence length	179
chains with identical sequence	D
ec nomenclature
pdb deposition date	2012-08-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF05351	GMP_PDE_delta	GMP-PDE, delta subunit

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.50.40	Mainly Beta	Distorted Sandwich	Coagulation Factor XIII; Chain A, domain 1	GMP phosphodiesterase, delta subunit	4gojC00

3T5GB 4JVFB 5TARB 5E80A 5F2UA 4GOJC 5L7KA 4JVBB 4JHPB 3T5IA 5E8FA 3RBQA 1KSJB 4GOKC 3GQQA 4JV6B 1KSHB 1KSGB 4JV8B 5TB5B
chains in the Genus database with same CATH superfamily

3T5GB 3L15A 5E80A 5F2UA 4OY8A 2JHVA 4JVBB 4ALTA 2JI0A 4ALRA 2YOXA 1KMTA 4OY7A 3EJAA 2BEMA 1GDFA 4FMRA 3RBQA 2BENA 2JHUA 5HGUA 3GQQA 4A02A 1RHOA 5TB5B 4JVFB 5TARB 3ZUDA 4ALEA 1QVYA 5L7KA 1FT0A 1FT3A 4LN0A 5DQ8A 1HH4D 5AA7A 4JHPB 5ACJA 2JHYA 5ACFA 4F38B 4MAHA 4MAIA 5HNOA 2YETA 1FSOA 1FSTA 4ALQA 5ACIA 2R5OA 2BXWA 3JUAA 5ACGA 2JHSA 2VTCA 2JHTA 5EMWA 3KYSA 3T5IA 5E8FA 1DS6B 2LHSA 5FTZA 2YOWA 2JHWA 4OY6A 4GOKC 5EMVA 1KSHB 4JV8B 4GBOA 4RE1A 5FJQA 2JHXA 2YOYA 4GOJC 4D7VA 3UAMA 4B5QA 5HNPA 2JHZA 1AJWA 3EIIA 5FOHA 4D7UA 4EISB 4ALSA 4ALCA 2XWXA 5IJUA 1KSJB 4QI8A 4JV6B 5DQEA 4EIRA 5ACHA 1DOAB 1KSGB 4EISA
chains in the Genus database with same CATH topology

3T5GB 4JVFB 5TARB 5E80A 5F2UA 4GOJC 5L7KA 4JVBB 4JHPB 3T5IA 5E8FA 3RBQA 1KSJB 4GOKC 3GQQA 4JV6B 1KSHB 1KSGB 4JV8B 5TB5B
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3T5G B;  4JVF B;  5TAR B;  5E80 A;  5F2U A;  4GOJ C;  5L7K A;  4JVB B;  4JHP B;  3T5I A;  5E8F A;  3RBQ A;  1KSJ B;  4GOK C;  3GQQ A;  4JV6 B;  1KSH B;  1KSG B;  4JV8 B;  5TB5 B; 
#chains in the Genus database with same CATH topology
 3T5G B;  3L15 A;  5E80 A;  5F2U A;  4OY8 A;  2JHV A;  4JVB B;  4ALT A;  2JI0 A;  4ALR A;  2YOX A;  1KMT A;  4OY7 A;  3EJA A;  2BEM A;  1GDF A;  4FMR A;  3RBQ A;  2BEN A;  2JHU A;  5HGU A;  3GQQ A;  4A02 A;  1RHO A;  5TB5 B;  4JVF B;  5TAR B;  3ZUD A;  4ALE A;  1QVY A;  5L7K A;  1FT0 A;  1FT3 A;  4LN0 A;  5DQ8 A;  1HH4 D;  5AA7 A;  4JHP B;  5ACJ A;  2JHY A;  5ACF A;  4F38 B;  4MAH A;  4MAI A;  5HNO A;  2YET A;  1FSO A;  1FST A;  4ALQ A;  5ACI A;  2R5O A;  2BXW A;  3JUA A;  5ACG A;  2JHS A;  2VTC A;  2JHT A;  5EMW A;  3KYS A;  3T5I A;  5E8F A;  1DS6 B;  2LHS A;  5FTZ A;  2YOW A;  2JHW A;  4OY6 A;  4GOK C;  5EMV A;  1KSH B;  4JV8 B;  4GBO A;  4RE1 A;  5FJQ A;  2JHX A;  2YOY A;  4GOJ C;  4D7V A;  3UAM A;  4B5Q A;  5HNP A;  2JHZ A;  1AJW A;  3EII A;  5FOH A;  4D7U A;  4EIS B;  4ALS A;  4ALC A;  2XWX A;  5IJU A;  1KSJ B;  4QI8 A;  4JV6 B;  5DQE A;  4EIR A;  5ACH A;  1DOA B;  1KSG B;  4EIS A; 
#chains in the Genus database with same CATH homology
 3T5G B;  4JVF B;  5TAR B;  5E80 A;  5F2U A;  4GOJ C;  5L7K A;  4JVB B;  4JHP B;  3T5I A;  5E8F A;  3RBQ A;  1KSJ B;  4GOK C;  3GQQ A;  4JV6 B;  1KSH B;  1KSG B;  4JV8 B;  5TB5 B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4GOJC

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations