4J7P | Genus

Total Genus 111

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	111
sequence length	330
structure length	323
Chain Sequence	KNLINIDKPIKELPASIAIPKEKPLTGEQQKMYDEVLKHFSNPDLKVYTSEKNKSEDDLKPLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGYENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPKVPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLVFDEPFVKYVPKNELDSLYGGDLKFKYNHDVYWPALVETAREKRDHYFKRFQSFGGIVGLSEVDLRGTHEKLLYPVK

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lipid transport
source organism	Saccharomyces cerevisiae
publication title	Structural determinants for phosphatidylinositol recognition by Sfh3 and substrate-induced dimer-monomer transition during lipid transfer cycles. pubmed doi rcsb
molecule keywords	Phosphatidylinositol transfer protein PDR16
total genus	111
structure length	323
sequence length	330
chains with identical sequence	B
ec nomenclature
pdb deposition date	2013-02-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00650	CRAL_TRIO	CRAL/TRIO domain
A	PF03765	CRAL_TRIO_N	CRAL/TRIO, N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.525.10	Alpha Beta	3-Layer(aba) Sandwich	Phosphatidylinositol Transfer Protein Sec14p	CRAL-TRIO lipid binding domain	4j7pA00

1OLMA 1AUAA 3HY5A 3W67A 4TLGA 3B74A 4UYBA 2E2XA 3Q8GA 3B7ZA 3PEGA 4OMKA 1OIPA 4CJ6A 4CIZA 1R5LA 3B7QA 1OIZA 3W68A 1O6UA 3PG7A 2D4QA 1OLME 4M8ZA 3P7ZA 4OMJA 4FMMA 4J7PA 4J7QA 3HX3A 3B7NA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1OLM A;  1AUA A;  3HY5 A;  3W67 A;  4TLG A;  3B74 A;  4UYB A;  2E2X A;  3Q8G A;  3B7Z A;  3PEG A;  4OMK A;  1OIP A;  4CJ6 A;  4CIZ A;  1R5L A;  3B7Q A;  1OIZ A;  3W68 A;  1O6U A;  3PG7 A;  2D4Q A;  1OLM E;  4M8Z A;  3P7Z A;  4OMJ A;  4FMM A;  4J7P A;  4J7Q A;  3HX3 A;  3B7N A; 
#chains in the Genus database with same CATH topology
 1OLM A;  1AUA A;  3HY5 A;  3W67 A;  4TLG A;  3B74 A;  4UYB A;  2E2X A;  3Q8G A;  3B7Z A;  3PEG A;  4OMK A;  1OIP A;  4CJ6 A;  4CIZ A;  1R5L A;  3B7Q A;  1OIZ A;  3W68 A;  1O6U A;  3PG7 A;  2D4Q A;  1OLM E;  4M8Z A;  3P7Z A;  4OMJ A;  4FMM A;  4J7P A;  4J7Q A;  3HX3 A;  3B7N A; 
#chains in the Genus database with same CATH homology
 1OLM A;  1AUA A;  3HY5 A;  3W67 A;  4TLG A;  3B74 A;  4UYB A;  2E2X A;  3Q8G A;  3B7Z A;  3PEG A;  4OMK A;  1OIP A;  4CJ6 A;  4CIZ A;  1R5L A;  3B7Q A;  1OIZ A;  3W68 A;  1O6U A;  3PG7 A;  2D4Q A;  1OLM E;  4M8Z A;  3P7Z A;  4OMJ A;  4FMM A;  4J7P A;  4J7Q A;  3HX3 A;  3B7N A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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4J7PA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations