4OMJA

Crystal structure of spf bound to 2,3-oxidosqualene
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
274
structure length
274
Chain Sequence
MSGRVGDLSPRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKYYVRDQV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
source organism Homo sapiens
publication title Structural insights on cholesterol endosynthesis: Binding of squalene and 2,3-oxidosqualene to supernatant protein factor.
pubmed doi rcsb
molecule keywords SEC14-like protein 2
total genus 103
structure length 274
sequence length 274
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00650 CRAL_TRIO CRAL/TRIO domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.525.10 Alpha Beta 3-Layer(aba) Sandwich Phosphatidylinositol Transfer Protein Sec14p CRAL-TRIO lipid binding domain 4omjA00
3P7ZA 3PEGA 4J7PA 4TLGA 4CJ6A 4J7QA 3PG7A 3B7ZA 4OMJA 1R5LA 1AUAA 4UYBA 1OIPA 3W67A 2E2XA 1O6UA 3W68A 1OLME 4OMKA 3B74A 1OIZA 3HY5A 3Q8GA 4FMMA 1OLMA 4M8ZA 2D4QA 3B7NA 3B7QA 3HX3A 4CIZA
chains in the Genus database with same CATH superfamily
3P7ZA 3PEGA 4J7PA 4TLGA 4CJ6A 4J7QA 3PG7A 3B7ZA 4OMJA 1R5LA 1AUAA 4UYBA 1OIPA 3W67A 2E2XA 1O6UA 3W68A 1OLME 4OMKA 3B74A 1OIZA 3HY5A 3Q8GA 4FMMA 1OLMA 4M8ZA 2D4QA 3B7NA 3B7QA 3HX3A 4CIZA
chains in the Genus database with same CATH topology
3P7ZA 3PEGA 4J7PA 4TLGA 4CJ6A 4J7QA 3PG7A 3B7ZA 4OMJA 1R5LA 1AUAA 4UYBA 1OIPA 3W67A 2E2XA 1O6UA 3W68A 1OLME 4OMKA 3B74A 1OIZA 3HY5A 3Q8GA 4FMMA 1OLMA 4M8ZA 2D4QA 3B7NA 3B7QA 3HX3A 4CIZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3P7Z A;  3PEG A;  4J7P A;  4TLG A;  4CJ6 A;  4J7Q A;  3PG7 A;  3B7Z A;  4OMJ A;  1R5L A;  1AUA A;  4UYB A;  1OIP A;  3W67 A;  2E2X A;  1O6U A;  3W68 A;  1OLM E;  4OMK A;  3B74 A;  1OIZ A;  3HY5 A;  3Q8G A;  4FMM A;  1OLM A;  4M8Z A;  2D4Q A;  3B7N A;  3B7Q A;  3HX3 A;  4CIZ A; 
#chains in the Genus database with same CATH topology
 3P7Z A;  3PEG A;  4J7P A;  4TLG A;  4CJ6 A;  4J7Q A;  3PG7 A;  3B7Z A;  4OMJ A;  1R5L A;  1AUA A;  4UYB A;  1OIP A;  3W67 A;  2E2X A;  1O6U A;  3W68 A;  1OLM E;  4OMK A;  3B74 A;  1OIZ A;  3HY5 A;  3Q8G A;  4FMM A;  1OLM A;  4M8Z A;  2D4Q A;  3B7N A;  3B7Q A;  3HX3 A;  4CIZ A; 
#chains in the Genus database with same CATH homology
 3P7Z A;  3PEG A;  4J7P A;  4TLG A;  4CJ6 A;  4J7Q A;  3PG7 A;  3B7Z A;  4OMJ A;  1R5L A;  1AUA A;  4UYB A;  1OIP A;  3W67 A;  2E2X A;  1O6U A;  3W68 A;  1OLM E;  4OMK A;  3B74 A;  1OIZ A;  3HY5 A;  3Q8G A;  4FMM A;  1OLM A;  4M8Z A;  2D4Q A;  3B7N A;  3B7Q A;  3HX3 A;  4CIZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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