4KFM | Genus

Total Genus 12

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	12
sequence length	60
structure length	60
Chain Sequence	SIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFREKKFF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 60 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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60 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	X-ray structure of the mammalian GIRK2-beta gamma G-protein complex. pubmed doi rcsb
molecule keywords	G protein-activated inward rectifier potassium channel 2
molecule tags	Metal transport
source organism	Mus musculus
total genus	12
structure length	60
sequence length	60
ec nomenclature
pdb deposition date	2013-04-27

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.260.10	Few Secondary Structures	Irregular	G Protein Gi Gamma 2	Transducin (heterotrimeric G protein), gamma chain	4kfmG00

5HE3G 3V5WG 5HE0G 2PBIA 2TRCG 5KDOG 1B9YB 4MK0G 1GG2G 3PVWG 5HE1G 3SN6G 1GOTG 3AH8G 5TDHG 1GP2G 1A0RG 4PNKG 2BCJG 3PSCG 4KFMG 3KRXG 1XHMB 1OMWG 3PVUG 1B9XB 5HE2G 3CIKG 3KRWG 1TBGE
chains in the Genus database with same CATH superfamily

5HE3G 3V5WG 5HE0G 2PBIA 2TRCG 5KDOG 1B9YB 4MK0G 1GG2G 3PVWG 5HE1G 3SN6G 1GOTG 1IOJA 3AH8G 5TDHG 1GP2G 1A0RG 4PNKG 2BCJG 1HFES 3PSCG 4KFMG 3KRXG 1XHMB 1OMWG 3PVUG 1B9XB 5HE2G 3CIKG 3KRWG 1TBGE
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5HE3 G;  3V5W G;  5HE0 G;  2PBI A;  2TRC G;  5KDO G;  1B9Y B;  4MK0 G;  1GG2 G;  3PVW G;  5HE1 G;  3SN6 G;  1GOT G;  3AH8 G;  5TDH G;  1GP2 G;  1A0R G;  4PNK G;  2BCJ G;  3PSC G;  4KFM G;  3KRX G;  1XHM B;  1OMW G;  3PVU G;  1B9X B;  5HE2 G;  3CIK G;  3KRW G;  1TBG E; 
#chains in the Genus database with same CATH topology
 5HE3 G;  3V5W G;  5HE0 G;  2PBI A;  2TRC G;  5KDO G;  1B9Y B;  4MK0 G;  1GG2 G;  3PVW G;  5HE1 G;  3SN6 G;  1GOT G;  1IOJ A;  3AH8 G;  5TDH G;  1GP2 G;  1A0R G;  4PNK G;  2BCJ G;  1HFE S;  3PSC G;  4KFM G;  3KRX G;  1XHM B;  1OMW G;  3PVU G;  1B9X B;  5HE2 G;  3CIK G;  3KRW G;  1TBG E; 
#chains in the Genus database with same CATH homology
 5HE3 G;  3V5W G;  5HE0 G;  2PBI A;  2TRC G;  5KDO G;  1B9Y B;  4MK0 G;  1GG2 G;  3PVW G;  5HE1 G;  3SN6 G;  1GOT G;  3AH8 G;  5TDH G;  1GP2 G;  1A0R G;  4PNK G;  2BCJ G;  3PSC G;  4KFM G;  3KRX G;  1XHM B;  1OMW G;  3PVU G;  1B9X B;  5HE2 G;  3CIK G;  3KRW G;  1TBG E;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

4KFMG

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN