4MQ0 | Genus

Total Genus 79

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	79
sequence length	440
structure length	438
Chain Sequence	GMISVGPWGGSGGDHWSFKANHAITEILIHVKDNIKSISFKDAGGDISGTFGGKDPRENKKGEEKKIGIRWPTEYLKSISGSYGDYNGILVIRSLSFITNLTTYGPFGSTSGGESFSIPIADSVVVGFHGRAGYYLDALGIFVQPVPHRTISFGPWGGPAGDDAFNFKVGSWIKDIIVYADATINSIAFKDADGHCEKFGGQDPNDIGVEEKVEIDGNLEHLTSISGTYGNYKGFEVLTSLSFITNVTKHGPFGIASGTSFSRPIEGSLVTGFHGKGGYYLDSIGIYVKPRDGSISIGPWGGSGGDPWSYTANEGINQIIIYAGSNIKSIAFKDTSGLDSATFGGVNPKDTGEKNTVSIKWPSEYLTSIDGTYGQYKFKDVFTTVTSLSFTTNLATYGPFGKASLTSFSIPIHNNMVVGFHGRAGDYLDAIGIFVKPD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 438 atoms

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438 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of Parkia biglobosa seed lectin (PBL) in complex with methyl alpha D-mannopyranoside rcsb
molecule keywords	Parkia biglobosa lectin (PBL)
molecule tags	Sugar binding protein
total genus	79
structure length	438
sequence length	440
ec nomenclature
pdb deposition date	2013-09-14

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	4mq0A02
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	4mq0A01
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	4mq0A03

1J4UA 1TP8A 1OUWA 3WOBA 1UGYA 3LL2A 3VZGA 1UGWC 1VBOA 3VZEA 1KUJA 2GUXA 4MQ0A 4R6NA 5AV7A 4PIUA 1UH1A 3P8SA 2GTYA 1VBPA 3LKYA 1KU8A 5J4TA 4GX7A 1J4TA 2BMZA 3MIUA 4AKDA 1WS5A 1UGYC 1UGXA 3WOCA 4DDNA 3R50A 4AKBA 5BN6E 2HYRA 1JOTA 3MITA 4AKCA 2GUEA 2NUOA 3VY6A 1WS5C 5J50A 5J51A 1C3MA 2GUDA 3LLZA 1C3NA 3VY7A 4PIFA 4R6OA 3LL1A 1PXDA 4PITA 1X1VA 4R6QA 1JACA 3LLYA 4WOGA 1UH0A 3MIVA 1ZGRA 2BMYA 5J4XA 1XEZA 3LL0A 4AK4A 1WS4A 1J4SA 4PIKA 2NU5A 3R52A 2HYQA 1C3KA 3VZFA 5JM1A 3O44A 1M26A 1XXQA 3LM1A 2JZ4A 2BN0A 1UGWA 1ZGSA 5EXGA 2GUCA 4R6PA 3R51A 3APAA 3AQGA 1XXRA 1WS4C 1TOQA 4R6RA
chains in the Genus database with same CATH superfamily

1JI6A 4W8JA 1J4UA 1TP8A 1OUWA 3WOBA 1UGYA 3LL2A 3VZGA 1UGWC 1VBOA 3VZEA 1KUJA 2GUXA 4MQ0A 4R6NA 5AV7A 4PIUA 1UH1A 3P8SA 2GTYA 1VBPA 3LKYA 1KU8A 5J4TA 4GX7A 3TOWA 1J4TA 2BMZA 3MIUA 4AKDA 1WS5A 1UGYC 1UGXA 3WOCA 4QX3A 4DDNA 3R50A 4AKBA 5BN6E 2HYRA 1JOTA 3MITA 4QX2A 4AKCA 2GUEA 2NUOA 2QP2A 1W99A 3VY6A 1VMOA 1WS5C 5J50A 4QX1A 5J51A 1C3MA 2GUDA 3LLZA 1C3NA 3VY7A 4PIFA 4R6OA 4ARXA 3LL1A 1I5PA 1PXDA 4PITA 1X1VA 4R6QA 1JACA 3LLYA 3EB7A 1UH0A 4WOGA 3MIVA 1ZGRA 2BMYA 4MOAA 5J4XA 1XEZA 3LL0A 4AK4A 1WS4A 1J4SA 4ARYA 2C9KA 4PIKA 2NU5A 4QX0A 3R52A 2HYQA 1C3KA 1DLCA 3VZFA 5JM1A 3O44A 1M26A 1XXQA 3LM1A 2JZ4A 4D8MA 2BN0A 1UGWA 1ZGSA 5EXGA 2GUCA 4R6PA 3R51A 1CIYA 3APAA 3AQGA 1XXRA 1WS4C 1TOQA 4R6RA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1J4U A;  1TP8 A;  1OUW A;  3WOB A;  1UGY A;  3LL2 A;  3VZG A;  1UGW C;  1VBO A;  3VZE A;  1KUJ A;  2GUX A;  4MQ0 A;  4R6N A;  5AV7 A;  4PIU A;  1UH1 A;  3P8S A;  2GTY A;  1VBP A;  3LKY A;  1KU8 A;  5J4T A;  4GX7 A;  1J4T A;  2BMZ A;  3MIU A;  4AKD A;  1WS5 A;  1UGY C;  1UGX A;  3WOC A;  4DDN A;  3R50 A;  4AKB A;  5BN6 E;  2HYR A;  1JOT A;  3MIT A;  4AKC A;  2GUE A;  2NUO A;  3VY6 A;  1WS5 C;  5J50 A;  5J51 A;  1C3M A;  2GUD A;  3LLZ A;  1C3N A;  3VY7 A;  4PIF A;  4R6O A;  3LL1 A;  1PXD A;  4PIT A;  1X1V A;  4R6Q A;  1JAC A;  3LLY A;  4WOG A;  1UH0 A;  3MIV A;  1ZGR A;  2BMY A;  5J4X A;  1XEZ A;  3LL0 A;  4AK4 A;  1WS4 A;  1J4S A;  4PIK A;  2NU5 A;  3R52 A;  2HYQ A;  1C3K A;  3VZF A;  5JM1 A;  3O44 A;  1M26 A;  1XXQ A;  3LM1 A;  2JZ4 A;  2BN0 A;  1UGW A;  1ZGS A;  5EXG A;  2GUC A;  4R6P A;  3R51 A;  3APA A;  3AQG A;  1XXR A;  1WS4 C;  1TOQ A;  4R6R A; 
#chains in the Genus database with same CATH topology
 1JI6 A;  4W8J A;  1J4U A;  1TP8 A;  1OUW A;  3WOB A;  1UGY A;  3LL2 A;  3VZG A;  1UGW C;  1VBO A;  3VZE A;  1KUJ A;  2GUX A;  4MQ0 A;  4R6N A;  5AV7 A;  4PIU A;  1UH1 A;  3P8S A;  2GTY A;  1VBP A;  3LKY A;  1KU8 A;  5J4T A;  4GX7 A;  3TOW A;  1J4T A;  2BMZ A;  3MIU A;  4AKD A;  1WS5 A;  1UGY C;  1UGX A;  3WOC A;  4QX3 A;  4DDN A;  3R50 A;  4AKB A;  5BN6 E;  2HYR A;  1JOT A;  3MIT A;  4QX2 A;  4AKC A;  2GUE A;  2NUO A;  2QP2 A;  1W99 A;  3VY6 A;  1VMO A;  1WS5 C;  5J50 A;  4QX1 A;  5J51 A;  1C3M A;  2GUD A;  3LLZ A;  1C3N A;  3VY7 A;  4PIF A;  4R6O A;  4ARX A;  3LL1 A;  1I5P A;  1PXD A;  4PIT A;  1X1V A;  4R6Q A;  1JAC A;  3LLY A;  3EB7 A;  1UH0 A;  4WOG A;  3MIV A;  1ZGR A;  2BMY A;  4MOA A;  5J4X A;  1XEZ A;  3LL0 A;  4AK4 A;  1WS4 A;  1J4S A;  4ARY A;  2C9K A;  4PIK A;  2NU5 A;  4QX0 A;  3R52 A;  2HYQ A;  1C3K A;  1DLC A;  3VZF A;  5JM1 A;  3O44 A;  1M26 A;  1XXQ A;  3LM1 A;  2JZ4 A;  4D8M A;  2BN0 A;  1UGW A;  1ZGS A;  5EXG A;  2GUC A;  4R6P A;  3R51 A;  1CIY A;  3APA A;  3AQG A;  1XXR A;  1WS4 C;  1TOQ A;  4R6R A; 
#chains in the Genus database with same CATH homology
 1J4U A;  1TP8 A;  1OUW A;  3WOB A;  1UGY A;  3LL2 A;  3VZG A;  1UGW C;  1VBO A;  3VZE A;  1KUJ A;  2GUX A;  4MQ0 A;  4R6N A;  5AV7 A;  4PIU A;  1UH1 A;  3P8S A;  2GTY A;  1VBP A;  3LKY A;  1KU8 A;  5J4T A;  4GX7 A;  1J4T A;  2BMZ A;  3MIU A;  4AKD A;  1WS5 A;  1UGY C;  1UGX A;  3WOC A;  4DDN A;  3R50 A;  4AKB A;  5BN6 E;  2HYR A;  1JOT A;  3MIT A;  4AKC A;  2GUE A;  2NUO A;  3VY6 A;  1WS5 C;  5J50 A;  5J51 A;  1C3M A;  2GUD A;  3LLZ A;  1C3N A;  3VY7 A;  4PIF A;  4R6O A;  3LL1 A;  1PXD A;  4PIT A;  1X1V A;  4R6Q A;  1JAC A;  3LLY A;  4WOG A;  1UH0 A;  3MIV A;  1ZGR A;  2BMY A;  5J4X A;  1XEZ A;  3LL0 A;  4AK4 A;  1WS4 A;  1J4S A;  4PIK A;  2NU5 A;  3R52 A;  2HYQ A;  1C3K A;  3VZF A;  5JM1 A;  3O44 A;  1M26 A;  1XXQ A;  3LM1 A;  2JZ4 A;  2BN0 A;  1UGW A;  1ZGS A;  5EXG A;  2GUC A;  4R6P A;  3R51 A;  3APA A;  3AQG A;  1XXR A;  1WS4 C;  1TOQ A;  4R6R A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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4MQ0A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN