4PIFA

Crystal structure of recombinant wt banana lectin
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
139
structure length
139
Chain Sequence
AIKVGAWGGNGGSAFDMGPAYRIISVKIFSGDVVDGVDVTFTYYGKTETRHYGGSGGTPHEIVLQEGEYLVGMAGEVANYHGAVVLGKLGFSTNKKAYGPFGNTGGTPFSLPIAAGKISGFFGRGGKFLDAIGVYLEPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Engineering a Therapeutic Lectin by Uncoupling Mitogenicity from Antiviral Activity.
pubmed doi rcsb
molecule tags Sugar binding protein
source organism Musa acuminata
molecule keywords Ripening-associated protein
total genus 22
structure length 139
sequence length 139
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 4pifA00
3VZFA 1UH0A 3VZEA 1J4TA 4PIKA 1VBOA 4R6PA 4AK4A 4AKBA 2NU5A 3LLZA 1WS5A 4MQ0A 2BMZA 1UGXA 3VZGA 4GX7A 3R52A 1UGYA 2GUEA 2GUDA 3WOBA 2JZ4A 1KUJA 1XXRA 1VBPA 4AKCA 5AV7A 2BMYA 1WS4A 1ZGSA 3AQGA 3R50A 2GTYA 5BN6E 3LKYA 5J51A 4R6RA 4R6NA 1WS5C 3LM1A 4AKDA 4PITA 1UH1A 3MITA 3MIUA 5J4TA 2NUOA 5JM1A 1UGYC 3O44A 4PIUA 1J4UA 1XEZA 4R6OA 1C3NA 2HYQA 2HYRA 3LLYA 1WS4C 1PXDA 3LL2A 1C3KA 1ZGRA 3VY7A 3P8SA 4DDNA 1C3MA 1XXQA 4PIFA 5J4XA 1JACA 1OUWA 1X1VA 3MIVA 4R6QA 1JOTA 3VY6A 3R51A 3LL1A 2GUCA 1UGWA 2BN0A 1KU8A 3LL0A 2GUXA 1TP8A 1UGWC 3WOCA 5EXGA 1M26A 5J50A 1TOQA 3APAA 1J4SA 4WOGA
chains in the Genus database with same CATH superfamily
3VZFA 1UH0A 3VZEA 1J4TA 4PIKA 1VBOA 4R6PA 4AK4A 4AKBA 2NU5A 3LLZA 1WS5A 4MQ0A 2BMZA 1UGXA 3VZGA 4GX7A 4WOGA 4QX0A 3R52A 1UGYA 2GUEA 2GUDA 3WOBA 2JZ4A 1KUJA 1XXRA 1VBPA 4AKCA 5AV7A 2BMYA 1WS4A 1ZGSA 3AQGA 1JI6A 4MOAA 4QX1A 2GTYA 5BN6E 3LKYA 5J51A 4R6RA 4R6NA 1WS5C 3LM1A 3EB7A 4AKDA 4PITA 1UH1A 3MITA 4ARYA 3MIUA 5J4TA 2QP2A 2NUOA 4W8JA 5JM1A 1UGYC 3O44A 4PIUA 1J4UA 1XEZA 4R6OA 1C3NA 2HYQA 2HYRA 3LLYA 1WS4C 4D8MA 1PXDA 3LL2A 1DLCA 1VMOA 1C3KA 1ZGRA 4QX3A 3VY7A 2C9KA 3P8SA 4DDNA 1C3MA 1XXQA 4PIFA 1W99A 5J4XA 1JACA 1OUWA 1X1VA 3MIVA 4R6QA 1JOTA 3VY6A 3R51A 3LL1A 2GUCA 4ARXA 1UGWA 2BN0A 4QX2A 1CIYA 1KU8A 3LL0A 2GUXA 1I5PA 1TP8A 3TOWA 1UGWC 3WOCA 5EXGA 1M26A 5J50A 1TOQA 3APAA 1J4SA 3R50A
chains in the Genus database with same CATH topology
3VZFA 1UH0A 3VZEA 1J4TA 4PIKA 1VBOA 4R6PA 4AK4A 4AKBA 2NU5A 3LLZA 1WS5A 4MQ0A 2BMZA 1UGXA 3VZGA 4GX7A 3R52A 1UGYA 2GUEA 2GUDA 3WOBA 2JZ4A 1KUJA 1XXRA 1VBPA 4AKCA 5AV7A 2BMYA 1WS4A 1ZGSA 3AQGA 3R50A 2GTYA 5BN6E 3LKYA 5J51A 4R6RA 4R6NA 1WS5C 3LM1A 4AKDA 4PITA 1UH1A 3MITA 3MIUA 5J4TA 2NUOA 5JM1A 1UGYC 3O44A 4PIUA 1J4UA 1XEZA 4R6OA 1C3NA 2HYQA 2HYRA 3LLYA 1WS4C 1PXDA 3LL2A 1C3KA 1ZGRA 3VY7A 3P8SA 4DDNA 1C3MA 1XXQA 4PIFA 5J4XA 1JACA 1OUWA 1X1VA 3MIVA 4R6QA 1JOTA 3VY6A 3R51A 3LL1A 2GUCA 1UGWA 2BN0A 1KU8A 3LL0A 2GUXA 1TP8A 1UGWC 3WOCA 5EXGA 1M26A 5J50A 1TOQA 3APAA 1J4SA 4WOGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VZF A;  1UH0 A;  3VZE A;  1J4T A;  4PIK A;  1VBO A;  4R6P A;  4AK4 A;  4AKB A;  2NU5 A;  3LLZ A;  1WS5 A;  4MQ0 A;  2BMZ A;  1UGX A;  3VZG A;  4GX7 A;  3R52 A;  1UGY A;  2GUE A;  2GUD A;  3WOB A;  2JZ4 A;  1KUJ A;  1XXR A;  1VBP A;  4AKC A;  5AV7 A;  2BMY A;  1WS4 A;  1ZGS A;  3AQG A;  3R50 A;  2GTY A;  5BN6 E;  3LKY A;  5J51 A;  4R6R A;  4R6N A;  1WS5 C;  3LM1 A;  4AKD A;  4PIT A;  1UH1 A;  3MIT A;  3MIU A;  5J4T A;  2NUO A;  5JM1 A;  1UGY C;  3O44 A;  4PIU A;  1J4U A;  1XEZ A;  4R6O A;  1C3N A;  2HYQ A;  2HYR A;  3LLY A;  1WS4 C;  1PXD A;  3LL2 A;  1C3K A;  1ZGR A;  3VY7 A;  3P8S A;  4DDN A;  1C3M A;  1XXQ A;  4PIF A;  5J4X A;  1JAC A;  1OUW A;  1X1V A;  3MIV A;  4R6Q A;  1JOT A;  3VY6 A;  3R51 A;  3LL1 A;  2GUC A;  1UGW A;  2BN0 A;  1KU8 A;  3LL0 A;  2GUX A;  1TP8 A;  1UGW C;  3WOC A;  5EXG A;  1M26 A;  5J50 A;  1TOQ A;  3APA A;  1J4S A;  4WOG A; 
#chains in the Genus database with same CATH topology
 3VZF A;  1UH0 A;  3VZE A;  1J4T A;  4PIK A;  1VBO A;  4R6P A;  4AK4 A;  4AKB A;  2NU5 A;  3LLZ A;  1WS5 A;  4MQ0 A;  2BMZ A;  1UGX A;  3VZG A;  4GX7 A;  4WOG A;  4QX0 A;  3R52 A;  1UGY A;  2GUE A;  2GUD A;  3WOB A;  2JZ4 A;  1KUJ A;  1XXR A;  1VBP A;  4AKC A;  5AV7 A;  2BMY A;  1WS4 A;  1ZGS A;  3AQG A;  1JI6 A;  4MOA A;  4QX1 A;  2GTY A;  5BN6 E;  3LKY A;  5J51 A;  4R6R A;  4R6N A;  1WS5 C;  3LM1 A;  3EB7 A;  4AKD A;  4PIT A;  1UH1 A;  3MIT A;  4ARY A;  3MIU A;  5J4T A;  2QP2 A;  2NUO A;  4W8J A;  5JM1 A;  1UGY C;  3O44 A;  4PIU A;  1J4U A;  1XEZ A;  4R6O A;  1C3N A;  2HYQ A;  2HYR A;  3LLY A;  1WS4 C;  4D8M A;  1PXD A;  3LL2 A;  1DLC A;  1VMO A;  1C3K A;  1ZGR A;  4QX3 A;  3VY7 A;  2C9K A;  3P8S A;  4DDN A;  1C3M A;  1XXQ A;  4PIF A;  1W99 A;  5J4X A;  1JAC A;  1OUW A;  1X1V A;  3MIV A;  4R6Q A;  1JOT A;  3VY6 A;  3R51 A;  3LL1 A;  2GUC A;  4ARX A;  1UGW A;  2BN0 A;  4QX2 A;  1CIY A;  1KU8 A;  3LL0 A;  2GUX A;  1I5P A;  1TP8 A;  3TOW A;  1UGW C;  3WOC A;  5EXG A;  1M26 A;  5J50 A;  1TOQ A;  3APA A;  1J4S A;  3R50 A; 
#chains in the Genus database with same CATH homology
 3VZF A;  1UH0 A;  3VZE A;  1J4T A;  4PIK A;  1VBO A;  4R6P A;  4AK4 A;  4AKB A;  2NU5 A;  3LLZ A;  1WS5 A;  4MQ0 A;  2BMZ A;  1UGX A;  3VZG A;  4GX7 A;  3R52 A;  1UGY A;  2GUE A;  2GUD A;  3WOB A;  2JZ4 A;  1KUJ A;  1XXR A;  1VBP A;  4AKC A;  5AV7 A;  2BMY A;  1WS4 A;  1ZGS A;  3AQG A;  3R50 A;  2GTY A;  5BN6 E;  3LKY A;  5J51 A;  4R6R A;  4R6N A;  1WS5 C;  3LM1 A;  4AKD A;  4PIT A;  1UH1 A;  3MIT A;  3MIU A;  5J4T A;  2NUO A;  5JM1 A;  1UGY C;  3O44 A;  4PIU A;  1J4U A;  1XEZ A;  4R6O A;  1C3N A;  2HYQ A;  2HYR A;  3LLY A;  1WS4 C;  1PXD A;  3LL2 A;  1C3K A;  1ZGR A;  3VY7 A;  3P8S A;  4DDN A;  1C3M A;  1XXQ A;  4PIF A;  5J4X A;  1JAC A;  1OUW A;  1X1V A;  3MIV A;  4R6Q A;  1JOT A;  3VY6 A;  3R51 A;  3LL1 A;  2GUC A;  1UGW A;  2BN0 A;  1KU8 A;  3LL0 A;  2GUX A;  1TP8 A;  1UGW C;  3WOC A;  5EXG A;  1M26 A;  5J50 A;  1TOQ A;  3APA A;  1J4S A;  4WOG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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