4PIF | Genus

Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	22
sequence length	139
structure length	139
Chain Sequence	AIKVGAWGGNGGSAFDMGPAYRIISVKIFSGDVVDGVDVTFTYYGKTETRHYGGSGGTPHEIVLQEGEYLVGMAGEVANYHGAVVLGKLGFSTNKKAYGPFGNTGGTPFSLPIAAGKISGFFGRGGKFLDAIGVYLEPL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Engineering a Therapeutic Lectin by Uncoupling Mitogenicity from Antiviral Activity. pubmed doi rcsb
molecule keywords	Ripening-associated protein
molecule tags	Sugar binding protein
source organism	Musa acuminata
total genus	22
structure length	139
sequence length	139
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2014-05-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	4pifA00

2BMYA 2GUXA 1TP8A 1OUWA 1VBOA 3LKYA 5BN6E 3O44A 3LLYA 3VZGA 1KUJA 1WS5C 4AK4A 1VBPA 1UGYC 3WOBA 3VZEA 1UGXA 3R52A 2BN0A 5AV7A 1WS4C 4R6NA 3AQGA 4R6RA 3P8SA 1WS4A 4R6PA 1UH1A 5J50A 1C3MA 4AKCA 5JM1A 3VY6A 1C3KA 3MITA 1J4TA 3LL0A 5J4XA 1J4SA 3APAA 1C3NA 2GUCA 3MIVA 2NUOA 2GTYA 1ZGRA 2GUEA 1UGWA 4AKBA 1XXQA 4PITA 3VY7A 1UH0A 1M26A 4AKDA 5J4TA 5EXGA 3LL2A 4WOGA 4R6OA 3VZFA 1JACA 1TOQA 1X1VA 1XEZA 3LL1A 2HYQA 4PIUA 3LM1A 1UGWC 5J51A 4PIFA 3LLZA 3R51A 2JZ4A 4PIKA 3WOCA 4R6QA 1PXDA 3R50A 1J4UA 2HYRA 1ZGSA 2GUDA 2NU5A 4MQ0A 1KU8A 1JOTA 4DDNA 1XXRA 2BMZA 1WS5A 4GX7A 1UGYA 3MIUA
chains in the Genus database with same CATH superfamily

2BMYA 2GUXA 1TP8A 1OUWA 1VBOA 3LKYA 1W99A 5BN6E 3O44A 3LLYA 3VZGA 1I5PA 2QP2A 1KUJA 1WS5C 4AK4A 1VBPA 1UGYC 3WOBA 3VZEA 4QX0A 1UGXA 3R52A 4QX2A 2BN0A 5AV7A 1WS4C 1DLCA 1JI6A 4R6NA 3AQGA 4R6RA 3P8SA 1WS4A 4R6PA 1UH1A 5J50A 4D8MA 1C3MA 4AKCA 5JM1A 3VY6A 1C3KA 4W8JA 3MITA 1J4TA 3LL0A 5J4XA 1J4SA 3APAA 1C3NA 2GUCA 3MIVA 2NUOA 2GTYA 1ZGRA 2GUEA 1UGWA 4AKBA 1XXQA 4PITA 3VY7A 4MOAA 1UH0A 1M26A 4AKDA 5J4TA 5EXGA 3LL2A 4WOGA 4R6OA 3VZFA 1JACA 1TOQA 1X1VA 1XEZA 3LL1A 2HYQA 4PIUA 3LM1A 1UGWC 5J51A 4PIFA 3LLZA 3R51A 2JZ4A 4PIKA 1VMOA 3WOCA 4R6QA 1PXDA 3R50A 1J4UA 2HYRA 3EB7A 1CIYA 4ARYA 1ZGSA 2GUDA 2NU5A 4MQ0A 1KU8A 1JOTA 4QX3A 2C9KA 4DDNA 1XXRA 3TOWA 2BMZA 4QX1A 1WS5A 4GX7A 1UGYA 3MIUA 4ARXA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2BMY A;  2GUX A;  1TP8 A;  1OUW A;  1VBO A;  3LKY A;  5BN6 E;  3O44 A;  3LLY A;  3VZG A;  1KUJ A;  1WS5 C;  4AK4 A;  1VBP A;  1UGY C;  3WOB A;  3VZE A;  1UGX A;  3R52 A;  2BN0 A;  5AV7 A;  1WS4 C;  4R6N A;  3AQG A;  4R6R A;  3P8S A;  1WS4 A;  4R6P A;  1UH1 A;  5J50 A;  1C3M A;  4AKC A;  5JM1 A;  3VY6 A;  1C3K A;  3MIT A;  1J4T A;  3LL0 A;  5J4X A;  1J4S A;  3APA A;  1C3N A;  2GUC A;  3MIV A;  2NUO A;  2GTY A;  1ZGR A;  2GUE A;  1UGW A;  4AKB A;  1XXQ A;  4PIT A;  3VY7 A;  1UH0 A;  1M26 A;  4AKD A;  5J4T A;  5EXG A;  3LL2 A;  4WOG A;  4R6O A;  3VZF A;  1JAC A;  1TOQ A;  1X1V A;  1XEZ A;  3LL1 A;  2HYQ A;  4PIU A;  3LM1 A;  1UGW C;  5J51 A;  4PIF A;  3LLZ A;  3R51 A;  2JZ4 A;  4PIK A;  3WOC A;  4R6Q A;  1PXD A;  3R50 A;  1J4U A;  2HYR A;  1ZGS A;  2GUD A;  2NU5 A;  4MQ0 A;  1KU8 A;  1JOT A;  4DDN A;  1XXR A;  2BMZ A;  1WS5 A;  4GX7 A;  1UGY A;  3MIU A; 
#chains in the Genus database with same CATH topology
 2BMY A;  2GUX A;  1TP8 A;  1OUW A;  1VBO A;  3LKY A;  1W99 A;  5BN6 E;  3O44 A;  3LLY A;  3VZG A;  1I5P A;  2QP2 A;  1KUJ A;  1WS5 C;  4AK4 A;  1VBP A;  1UGY C;  3WOB A;  3VZE A;  4QX0 A;  1UGX A;  3R52 A;  4QX2 A;  2BN0 A;  5AV7 A;  1WS4 C;  1DLC A;  1JI6 A;  4R6N A;  3AQG A;  4R6R A;  3P8S A;  1WS4 A;  4R6P A;  1UH1 A;  5J50 A;  4D8M A;  1C3M A;  4AKC A;  5JM1 A;  3VY6 A;  1C3K A;  4W8J A;  3MIT A;  1J4T A;  3LL0 A;  5J4X A;  1J4S A;  3APA A;  1C3N A;  2GUC A;  3MIV A;  2NUO A;  2GTY A;  1ZGR A;  2GUE A;  1UGW A;  4AKB A;  1XXQ A;  4PIT A;  3VY7 A;  4MOA A;  1UH0 A;  1M26 A;  4AKD A;  5J4T A;  5EXG A;  3LL2 A;  4WOG A;  4R6O A;  3VZF A;  1JAC A;  1TOQ A;  1X1V A;  1XEZ A;  3LL1 A;  2HYQ A;  4PIU A;  3LM1 A;  1UGW C;  5J51 A;  4PIF A;  3LLZ A;  3R51 A;  2JZ4 A;  4PIK A;  1VMO A;  3WOC A;  4R6Q A;  1PXD A;  3R50 A;  1J4U A;  2HYR A;  3EB7 A;  1CIY A;  4ARY A;  1ZGS A;  2GUD A;  2NU5 A;  4MQ0 A;  1KU8 A;  1JOT A;  4QX3 A;  2C9K A;  4DDN A;  1XXR A;  3TOW A;  2BMZ A;  4QX1 A;  1WS5 A;  4GX7 A;  1UGY A;  3MIU A;  4ARX A; 
#chains in the Genus database with same CATH homology
 2BMY A;  2GUX A;  1TP8 A;  1OUW A;  1VBO A;  3LKY A;  5BN6 E;  3O44 A;  3LLY A;  3VZG A;  1KUJ A;  1WS5 C;  4AK4 A;  1VBP A;  1UGY C;  3WOB A;  3VZE A;  1UGX A;  3R52 A;  2BN0 A;  5AV7 A;  1WS4 C;  4R6N A;  3AQG A;  4R6R A;  3P8S A;  1WS4 A;  4R6P A;  1UH1 A;  5J50 A;  1C3M A;  4AKC A;  5JM1 A;  3VY6 A;  1C3K A;  3MIT A;  1J4T A;  3LL0 A;  5J4X A;  1J4S A;  3APA A;  1C3N A;  2GUC A;  3MIV A;  2NUO A;  2GTY A;  1ZGR A;  2GUE A;  1UGW A;  4AKB A;  1XXQ A;  4PIT A;  3VY7 A;  1UH0 A;  1M26 A;  4AKD A;  5J4T A;  5EXG A;  3LL2 A;  4WOG A;  4R6O A;  3VZF A;  1JAC A;  1TOQ A;  1X1V A;  1XEZ A;  3LL1 A;  2HYQ A;  4PIU A;  3LM1 A;  1UGW C;  5J51 A;  4PIF A;  3LLZ A;  3R51 A;  2JZ4 A;  4PIK A;  3WOC A;  4R6Q A;  1PXD A;  3R50 A;  1J4U A;  2HYR A;  1ZGS A;  2GUD A;  2NU5 A;  4MQ0 A;  1KU8 A;  1JOT A;  4DDN A;  1XXR A;  2BMZ A;  1WS5 A;  4GX7 A;  1UGY A;  3MIU A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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4PIFA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations