4PIFA

Crystal structure of recombinant wt banana lectin
Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
139
structure length
139
Chain Sequence
AIKVGAWGGNGGSAFDMGPAYRIISVKIFSGDVVDGVDVTFTYYGKTETRHYGGSGGTPHEIVLQEGEYLVGMAGEVANYHGAVVLGKLGFSTNKKAYGPFGNTGGTPFSLPIAAGKISGFFGRGGKFLDAIGVYLEPL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (16-22)S1 (5-11)S12 (132-140)TIV6 (128-131)S11 (120-128)TVIII3 (116-119)S4 (37-46)TVIII1 (23-26)S6 (61-66)S3 (25-33)S7 (73-83)S8 (86-96)TIV1 (33-36)S5 (49-56)TIV3 (45-48)TII1 (68-71)S10 (110-115)TIV4 (82-85)TIV5 (96-99)S9 (100-104)Updating...
connected with : NaN
molecule tags Sugar binding protein
source organism Musa acuminata
publication title Engineering a Therapeutic Lectin by Uncoupling Mitogenicity from Antiviral Activity.
pubmed doi rcsb
molecule keywords Ripening-associated protein
total genus 22
structure length 139
sequence length 139
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 4pifA00
1OUWA 1C3KA 1UGWC 2GUDA 1ZGSA 5EXGA 4WOGA 2NUOA 3MITA 2HYQA 1ZGRA 1TOQA 1WS5C 4R6RA 4R6PA 2BMYA 1C3MA 3R51A 3P8SA 3VY6A 3MIUA 1UGYA 1WS4A 2GUXA 1VBPA 1UGWA 3LLYA 3R50A 5J4XA 5JM1A 3LL1A 1J4UA 5J51A 3AQGA 1JACA 2BN0A 4AKCA 3LL2A 4R6NA 1VBOA 4AKDA 1WS5A 3R52A 3LM1A 2JZ4A 3APAA 1X1VA 4PITA 4PIUA 1XXRA 4PIFA 4R6QA 3VY7A 1C3NA 4GX7A 5J4TA 3WOBA 2GTYA 4PIKA 1J4SA 2NU5A 1UGXA 1UGYC 2BMZA 1WS4C 3VZFA 4DDNA 1UH0A 4MQ0A 3VZGA 3LLZA 1M26A 3O44A 2GUEA 3LL0A 1PXDA 1XXQA 5AV7A 1XEZA 3LKYA 3MIVA 2GUCA 3WOCA 2HYRA 4R6OA 1KU8A 4AKBA 5J50A 1JOTA 5BN6E 1TP8A 1J4TA 3VZEA 1UH1A 1KUJA 4AK4A
chains in the Genus database with same CATH superfamily
1OUWA 1C3KA 1JI6A 1UGWC 2GUDA 1ZGSA 5EXGA 4WOGA 2NUOA 3MITA 2HYQA 1ZGRA 1TOQA 1WS5C 4R6RA 4R6PA 2BMYA 1C3MA 3R51A 3P8SA 3VY6A 3MIUA 1UGYA 4QX2A 1WS4A 2GUXA 1VBPA 1UGWA 1CIYA 3LLYA 3R50A 5J4XA 5JM1A 3LL1A 1J4UA 5J51A 3AQGA 1JACA 2BN0A 4AKCA 3EB7A 3LL2A 4R6NA 1VBOA 4AKDA 1WS5A 3R52A 1DLCA 3LM1A 2JZ4A 3APAA 4W8JA 1X1VA 1W99A 4PITA 4PIUA 1XXRA 4PIFA 4R6QA 3VY7A 1C3NA 4ARXA 3TOWA 2C9KA 4GX7A 5J4TA 3WOBA 2GTYA 4PIKA 1J4SA 2NU5A 4MOAA 4ARYA 1UGXA 1UGYC 2BMZA 1WS4C 3VZFA 1I5PA 4DDNA 1UH0A 4MQ0A 4QX0A 3VZGA 3LLZA 4QX3A 1M26A 3O44A 2GUEA 3LL0A 1PXDA 1XXQA 5AV7A 1XEZA 3LKYA 3MIVA 2GUCA 3WOCA 2HYRA 4R6OA 1VMOA 1KU8A 4D8MA 4AKBA 5J50A 1JOTA 5BN6E 1TP8A 1J4TA 3VZEA 1UH1A 4QX1A 1KUJA 4AK4A 2QP2A
chains in the Genus database with same CATH topology
1OUWA 1C3KA 1UGWC 2GUDA 1ZGSA 5EXGA 4WOGA 2NUOA 3MITA 2HYQA 1ZGRA 1TOQA 1WS5C 4R6RA 4R6PA 2BMYA 1C3MA 3R51A 3P8SA 3VY6A 3MIUA 1UGYA 1WS4A 2GUXA 1VBPA 1UGWA 3LLYA 3R50A 5J4XA 5JM1A 3LL1A 1J4UA 5J51A 3AQGA 1JACA 2BN0A 4AKCA 3LL2A 4R6NA 1VBOA 4AKDA 1WS5A 3R52A 3LM1A 2JZ4A 3APAA 1X1VA 4PITA 4PIUA 1XXRA 4PIFA 4R6QA 3VY7A 1C3NA 4GX7A 5J4TA 3WOBA 2GTYA 4PIKA 1J4SA 2NU5A 1UGXA 1UGYC 2BMZA 1WS4C 3VZFA 4DDNA 1UH0A 4MQ0A 3VZGA 3LLZA 1M26A 3O44A 2GUEA 3LL0A 1PXDA 1XXQA 5AV7A 1XEZA 3LKYA 3MIVA 2GUCA 3WOCA 2HYRA 4R6OA 1KU8A 4AKBA 5J50A 1JOTA 5BN6E 1TP8A 1J4TA 3VZEA 1UH1A 1KUJA 4AK4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OUW A;  1C3K A;  1UGW C;  2GUD A;  1ZGS A;  5EXG A;  4WOG A;  2NUO A;  3MIT A;  2HYQ A;  1ZGR A;  1TOQ A;  1WS5 C;  4R6R A;  4R6P A;  2BMY A;  1C3M A;  3R51 A;  3P8S A;  3VY6 A;  3MIU A;  1UGY A;  1WS4 A;  2GUX A;  1VBP A;  1UGW A;  3LLY A;  3R50 A;  5J4X A;  5JM1 A;  3LL1 A;  1J4U A;  5J51 A;  3AQG A;  1JAC A;  2BN0 A;  4AKC A;  3LL2 A;  4R6N A;  1VBO A;  4AKD A;  1WS5 A;  3R52 A;  3LM1 A;  2JZ4 A;  3APA A;  1X1V A;  4PIT A;  4PIU A;  1XXR A;  4PIF A;  4R6Q A;  3VY7 A;  1C3N A;  4GX7 A;  5J4T A;  3WOB A;  2GTY A;  4PIK A;  1J4S A;  2NU5 A;  1UGX A;  1UGY C;  2BMZ A;  1WS4 C;  3VZF A;  4DDN A;  1UH0 A;  4MQ0 A;  3VZG A;  3LLZ A;  1M26 A;  3O44 A;  2GUE A;  3LL0 A;  1PXD A;  1XXQ A;  5AV7 A;  1XEZ A;  3LKY A;  3MIV A;  2GUC A;  3WOC A;  2HYR A;  4R6O A;  1KU8 A;  4AKB A;  5J50 A;  1JOT A;  5BN6 E;  1TP8 A;  1J4T A;  3VZE A;  1UH1 A;  1KUJ A;  4AK4 A; 
#chains in the Genus database with same CATH topology
 1OUW A;  1C3K A;  1JI6 A;  1UGW C;  2GUD A;  1ZGS A;  5EXG A;  4WOG A;  2NUO A;  3MIT A;  2HYQ A;  1ZGR A;  1TOQ A;  1WS5 C;  4R6R A;  4R6P A;  2BMY A;  1C3M A;  3R51 A;  3P8S A;  3VY6 A;  3MIU A;  1UGY A;  4QX2 A;  1WS4 A;  2GUX A;  1VBP A;  1UGW A;  1CIY A;  3LLY A;  3R50 A;  5J4X A;  5JM1 A;  3LL1 A;  1J4U A;  5J51 A;  3AQG A;  1JAC A;  2BN0 A;  4AKC A;  3EB7 A;  3LL2 A;  4R6N A;  1VBO A;  4AKD A;  1WS5 A;  3R52 A;  1DLC A;  3LM1 A;  2JZ4 A;  3APA A;  4W8J A;  1X1V A;  1W99 A;  4PIT A;  4PIU A;  1XXR A;  4PIF A;  4R6Q A;  3VY7 A;  1C3N A;  4ARX A;  3TOW A;  2C9K A;  4GX7 A;  5J4T A;  3WOB A;  2GTY A;  4PIK A;  1J4S A;  2NU5 A;  4MOA A;  4ARY A;  1UGX A;  1UGY C;  2BMZ A;  1WS4 C;  3VZF A;  1I5P A;  4DDN A;  1UH0 A;  4MQ0 A;  4QX0 A;  3VZG A;  3LLZ A;  4QX3 A;  1M26 A;  3O44 A;  2GUE A;  3LL0 A;  1PXD A;  1XXQ A;  5AV7 A;  1XEZ A;  3LKY A;  3MIV A;  2GUC A;  3WOC A;  2HYR A;  4R6O A;  1VMO A;  1KU8 A;  4D8M A;  4AKB A;  5J50 A;  1JOT A;  5BN6 E;  1TP8 A;  1J4T A;  3VZE A;  1UH1 A;  4QX1 A;  1KUJ A;  4AK4 A;  2QP2 A; 
#chains in the Genus database with same CATH homology
 1OUW A;  1C3K A;  1UGW C;  2GUD A;  1ZGS A;  5EXG A;  4WOG A;  2NUO A;  3MIT A;  2HYQ A;  1ZGR A;  1TOQ A;  1WS5 C;  4R6R A;  4R6P A;  2BMY A;  1C3M A;  3R51 A;  3P8S A;  3VY6 A;  3MIU A;  1UGY A;  1WS4 A;  2GUX A;  1VBP A;  1UGW A;  3LLY A;  3R50 A;  5J4X A;  5JM1 A;  3LL1 A;  1J4U A;  5J51 A;  3AQG A;  1JAC A;  2BN0 A;  4AKC A;  3LL2 A;  4R6N A;  1VBO A;  4AKD A;  1WS5 A;  3R52 A;  3LM1 A;  2JZ4 A;  3APA A;  1X1V A;  4PIT A;  4PIU A;  1XXR A;  4PIF A;  4R6Q A;  3VY7 A;  1C3N A;  4GX7 A;  5J4T A;  3WOB A;  2GTY A;  4PIK A;  1J4S A;  2NU5 A;  1UGX A;  1UGY C;  2BMZ A;  1WS4 C;  3VZF A;  4DDN A;  1UH0 A;  4MQ0 A;  3VZG A;  3LLZ A;  1M26 A;  3O44 A;  2GUE A;  3LL0 A;  1PXD A;  1XXQ A;  5AV7 A;  1XEZ A;  3LKY A;  3MIV A;  2GUC A;  3WOC A;  2HYR A;  4R6O A;  1KU8 A;  4AKB A;  5J50 A;  1JOT A;  5BN6 E;  1TP8 A;  1J4T A;  3VZE A;  1UH1 A;  1KUJ A;  4AK4 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.