4PITA

Crystal structure of banana lectin h84t bound to dimannose
Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
140
structure length
140
Chain Sequence
AIKVGAWGGNGGSAFDMGPAYRIISVKIFSGDVVDGVDVTFTYYGKTETRHYGGSGGTPHEIVLQEGEYLVGMAGEVANYTGAVVLGKLGFSTNKKAYGPFGNTGGTPFSLPIAAGKISGFFGRGGKFLDAIGVYLEPLE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (16-22)S1 (5-11)S12 (132-140)TIV6 (128-131)S11 (120-128)TVIII3 (116-119)S6 (61-66)S4 (37-46)TVIII1 (23-26)S3 (25-33)S7 (73-83)S8 (86-96)TIV1 (33-36)S5 (49-56)TIV3 (45-48)TII1 (68-71)S10 (110-115)TIV4 (82-85)TIV5 (96-99)S9 (100-104)Updating...
connected with : NaN
molecule tags Sugar binding protein
source organism Musa acuminata
publication title Engineering a Therapeutic Lectin by Uncoupling Mitogenicity from Antiviral Activity.
pubmed doi rcsb
molecule keywords Ripening-associated protein
total genus 25
structure length 140
sequence length 140
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 4pitA00
4AKDA 3VZFA 4PITA 1KUJA 4GX7A 3LLYA 1UGWC 3LLZA 5EXGA 1C3MA 4R6PA 1XXRA 4R6NA 4AKBA 1ZGSA 1J4UA 4PIFA 1OUWA 3VZGA 3LM1A 3AQGA 3MIVA 1J4TA 3LL1A 1VBOA 3R51A 1PXDA 1XEZA 1VBPA 1ZGRA 3MIUA 1XXQA 4PIUA 1J4SA 3R52A 3VZEA 3VY6A 2GUEA 1UGYA 2JZ4A 2HYRA 2BMYA 4AK4A 5J50A 3MITA 4PIKA 5JM1A 4WOGA 3LKYA 3R50A 3WOCA 2GTYA 1UGXA 3VY7A 1WS4C 2GUXA 1WS4A 3WOBA 1UH1A 4AKCA 1WS5C 1WS5A 1JOTA 1TOQA 1X1VA 5J4TA 1UGYC 5J4XA 1M26A 2NU5A 2NUOA 1C3KA 2GUDA 3O44A 1C3NA 2HYQA 4MQ0A 1TP8A 5BN6E 4DDNA 4R6QA 2BMZA 5AV7A 4R6OA 1UGWA 3LL2A 4R6RA 1JACA 2BN0A 3LL0A 1UH0A 3P8SA 1KU8A 3APAA 2GUCA 5J51A
chains in the Genus database with same CATH superfamily
4AKDA 3VZFA 4PITA 1KUJA 4GX7A 3LLYA 4ARXA 1UGWC 3LLZA 5EXGA 1C3MA 4R6PA 1XXRA 4R6NA 4AKBA 1ZGSA 4MOAA 4D8MA 1J4UA 4PIFA 1OUWA 3VZGA 3LM1A 3AQGA 3MIVA 4QX3A 1J4TA 3LL1A 1VBOA 3R51A 1PXDA 4W8JA 1XEZA 1VBPA 1ZGRA 3MIUA 1XXQA 3TOWA 4PIUA 1J4SA 3R52A 3VZEA 3VY6A 2GUEA 1UGYA 2JZ4A 2HYRA 2BMYA 4AK4A 1CIYA 5J50A 3MITA 4PIKA 5JM1A 4WOGA 1I5PA 3LKYA 3R50A 2QP2A 3WOCA 2GTYA 1UGXA 3VY7A 1WS4C 2GUXA 1WS4A 3WOBA 1JI6A 1UH1A 4AKCA 1WS5C 1WS5A 1JOTA 1TOQA 1X1VA 1DLCA 5J4TA 1UGYC 2C9KA 5J4XA 1M26A 2NU5A 2NUOA 1C3KA 2GUDA 1W99A 3O44A 1C3NA 2HYQA 4ARYA 4MQ0A 1TP8A 3EB7A 5BN6E 4DDNA 4R6QA 2BMZA 5AV7A 1VMOA 4R6OA 1UGWA 3LL2A 4QX2A 4R6RA 1JACA 2BN0A 3LL0A 1UH0A 3P8SA 1KU8A 4QX1A 3APAA 2GUCA 5J51A 4QX0A
chains in the Genus database with same CATH topology
4AKDA 3VZFA 4PITA 1KUJA 4GX7A 3LLYA 1UGWC 3LLZA 5EXGA 1C3MA 4R6PA 1XXRA 4R6NA 4AKBA 1ZGSA 1J4UA 4PIFA 1OUWA 3VZGA 3LM1A 3AQGA 3MIVA 1J4TA 3LL1A 1VBOA 3R51A 1PXDA 1XEZA 1VBPA 1ZGRA 3MIUA 1XXQA 4PIUA 1J4SA 3R52A 3VZEA 3VY6A 2GUEA 1UGYA 2JZ4A 2HYRA 2BMYA 4AK4A 5J50A 3MITA 4PIKA 5JM1A 4WOGA 3LKYA 3R50A 3WOCA 2GTYA 1UGXA 3VY7A 1WS4C 2GUXA 1WS4A 3WOBA 1UH1A 4AKCA 1WS5C 1WS5A 1JOTA 1TOQA 1X1VA 5J4TA 1UGYC 5J4XA 1M26A 2NU5A 2NUOA 1C3KA 2GUDA 3O44A 1C3NA 2HYQA 4MQ0A 1TP8A 5BN6E 4DDNA 4R6QA 2BMZA 5AV7A 4R6OA 1UGWA 3LL2A 4R6RA 1JACA 2BN0A 3LL0A 1UH0A 3P8SA 1KU8A 3APAA 2GUCA 5J51A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AKD A;  3VZF A;  4PIT A;  1KUJ A;  4GX7 A;  3LLY A;  1UGW C;  3LLZ A;  5EXG A;  1C3M A;  4R6P A;  1XXR A;  4R6N A;  4AKB A;  1ZGS A;  1J4U A;  4PIF A;  1OUW A;  3VZG A;  3LM1 A;  3AQG A;  3MIV A;  1J4T A;  3LL1 A;  1VBO A;  3R51 A;  1PXD A;  1XEZ A;  1VBP A;  1ZGR A;  3MIU A;  1XXQ A;  4PIU A;  1J4S A;  3R52 A;  3VZE A;  3VY6 A;  2GUE A;  1UGY A;  2JZ4 A;  2HYR A;  2BMY A;  4AK4 A;  5J50 A;  3MIT A;  4PIK A;  5JM1 A;  4WOG A;  3LKY A;  3R50 A;  3WOC A;  2GTY A;  1UGX A;  3VY7 A;  1WS4 C;  2GUX A;  1WS4 A;  3WOB A;  1UH1 A;  4AKC A;  1WS5 C;  1WS5 A;  1JOT A;  1TOQ A;  1X1V A;  5J4T A;  1UGY C;  5J4X A;  1M26 A;  2NU5 A;  2NUO A;  1C3K A;  2GUD A;  3O44 A;  1C3N A;  2HYQ A;  4MQ0 A;  1TP8 A;  5BN6 E;  4DDN A;  4R6Q A;  2BMZ A;  5AV7 A;  4R6O A;  1UGW A;  3LL2 A;  4R6R A;  1JAC A;  2BN0 A;  3LL0 A;  1UH0 A;  3P8S A;  1KU8 A;  3APA A;  2GUC A;  5J51 A; 
#chains in the Genus database with same CATH topology
 4AKD A;  3VZF A;  4PIT A;  1KUJ A;  4GX7 A;  3LLY A;  4ARX A;  1UGW C;  3LLZ A;  5EXG A;  1C3M A;  4R6P A;  1XXR A;  4R6N A;  4AKB A;  1ZGS A;  4MOA A;  4D8M A;  1J4U A;  4PIF A;  1OUW A;  3VZG A;  3LM1 A;  3AQG A;  3MIV A;  4QX3 A;  1J4T A;  3LL1 A;  1VBO A;  3R51 A;  1PXD A;  4W8J A;  1XEZ A;  1VBP A;  1ZGR A;  3MIU A;  1XXQ A;  3TOW A;  4PIU A;  1J4S A;  3R52 A;  3VZE A;  3VY6 A;  2GUE A;  1UGY A;  2JZ4 A;  2HYR A;  2BMY A;  4AK4 A;  1CIY A;  5J50 A;  3MIT A;  4PIK A;  5JM1 A;  4WOG A;  1I5P A;  3LKY A;  3R50 A;  2QP2 A;  3WOC A;  2GTY A;  1UGX A;  3VY7 A;  1WS4 C;  2GUX A;  1WS4 A;  3WOB A;  1JI6 A;  1UH1 A;  4AKC A;  1WS5 C;  1WS5 A;  1JOT A;  1TOQ A;  1X1V A;  1DLC A;  5J4T A;  1UGY C;  2C9K A;  5J4X A;  1M26 A;  2NU5 A;  2NUO A;  1C3K A;  2GUD A;  1W99 A;  3O44 A;  1C3N A;  2HYQ A;  4ARY A;  4MQ0 A;  1TP8 A;  3EB7 A;  5BN6 E;  4DDN A;  4R6Q A;  2BMZ A;  5AV7 A;  1VMO A;  4R6O A;  1UGW A;  3LL2 A;  4QX2 A;  4R6R A;  1JAC A;  2BN0 A;  3LL0 A;  1UH0 A;  3P8S A;  1KU8 A;  4QX1 A;  3APA A;  2GUC A;  5J51 A;  4QX0 A; 
#chains in the Genus database with same CATH homology
 4AKD A;  3VZF A;  4PIT A;  1KUJ A;  4GX7 A;  3LLY A;  1UGW C;  3LLZ A;  5EXG A;  1C3M A;  4R6P A;  1XXR A;  4R6N A;  4AKB A;  1ZGS A;  1J4U A;  4PIF A;  1OUW A;  3VZG A;  3LM1 A;  3AQG A;  3MIV A;  1J4T A;  3LL1 A;  1VBO A;  3R51 A;  1PXD A;  1XEZ A;  1VBP A;  1ZGR A;  3MIU A;  1XXQ A;  4PIU A;  1J4S A;  3R52 A;  3VZE A;  3VY6 A;  2GUE A;  1UGY A;  2JZ4 A;  2HYR A;  2BMY A;  4AK4 A;  5J50 A;  3MIT A;  4PIK A;  5JM1 A;  4WOG A;  3LKY A;  3R50 A;  3WOC A;  2GTY A;  1UGX A;  3VY7 A;  1WS4 C;  2GUX A;  1WS4 A;  3WOB A;  1UH1 A;  4AKC A;  1WS5 C;  1WS5 A;  1JOT A;  1TOQ A;  1X1V A;  5J4T A;  1UGY C;  5J4X A;  1M26 A;  2NU5 A;  2NUO A;  1C3K A;  2GUD A;  3O44 A;  1C3N A;  2HYQ A;  4MQ0 A;  1TP8 A;  5BN6 E;  4DDN A;  4R6Q A;  2BMZ A;  5AV7 A;  4R6O A;  1UGW A;  3LL2 A;  4R6R A;  1JAC A;  2BN0 A;  3LL0 A;  1UH0 A;  3P8S A;  1KU8 A;  3APA A;  2GUC A;  5J51 A; 
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