4R6NA

Jacalin-carbohydrate interactions. distortion of the ligand as a determinant of affinity
Total Genus 31
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Jacalin-carbohydrate interactions: distortion of the ligand molecule as a determinant of affinity.
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
total genus 31
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2014-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 4r6nA00
3APAA 3LKYA 4DDNA 5J4XA 4R6QA 3AQGA 3LL0A 3LLZA 3VY7A 4AKCA 1OUWA 2HYQA 1KU8A 1UGYC 3VY6A 3R52A 5J50A 1WS4A 1UGYA 4PIKA 3R50A 3MITA 4AKDA 4PITA 5EXGA 1TP8A 1UH0A 1ZGRA 3MIVA 4AKBA 4R6NA 1X1VA 3LL1A 3P8SA 1C3MA 1J4TA 1JOTA 1UGWC 3WOBA 2NUOA 1UGXA 3O44A 2HYRA 2JZ4A 4PIUA 2BMYA 4R6PA 1VBPA 5JM1A 1KUJA 5BN6E 1C3NA 1TOQA 2GTYA 4R6RA 2BMZA 4PIFA 1C3KA 5AV7A 3VZFA 2GUXA 4WOGA 3LLYA 4R6OA 3LM1A 1VBOA 2GUDA 2GUEA 1XXRA 2GUCA 5J51A 1M26A 1ZGSA 1JACA 4GX7A 5J4TA 1PXDA 1UGWA 1UH1A 3MIUA 2NU5A 3VZGA 1J4SA 1XEZA 1XXQA 2BN0A 3VZEA 4AK4A 1WS5C 3LL2A 1J4UA 1WS4C 3WOCA 4MQ0A 3R51A 1WS5A
chains in the Genus database with same CATH superfamily
3EB7A 2QP2A 3APAA 3LKYA 3TOWA 5J4XA 4DDNA 4R6QA 3AQGA 3LL0A 3LLZA 3VY7A 1VMOA 4AKCA 1OUWA 1CIYA 2HYQA 1KU8A 1UGYC 3VY6A 3R52A 5J50A 1WS4A 4ARXA 2C9KA 4QX2A 1UGYA 4PIKA 3R50A 3MITA 4AKDA 4QX3A 4QX1A 4PITA 5EXGA 1TP8A 4D8MA 1UH0A 1ZGRA 1I5PA 3MIVA 4AKBA 4R6NA 1JI6A 1X1VA 3LL1A 3P8SA 1C3MA 1J4TA 1JOTA 1UGWC 3WOBA 2NUOA 1UGXA 3O44A 2HYRA 2JZ4A 4PIUA 2BMYA 4R6PA 1VBPA 1W99A 5JM1A 1KUJA 5BN6E 1C3NA 1TOQA 2GTYA 4R6RA 2BMZA 4QX0A 4PIFA 1C3KA 4W8JA 5AV7A 3VZFA 2GUXA 4WOGA 3LLYA 4R6OA 3LM1A 1VBOA 2GUDA 2GUEA 1XXRA 2GUCA 5J51A 1M26A 1ZGSA 1JACA 4GX7A 5J4TA 1PXDA 1UGWA 1UH1A 3MIUA 2NU5A 4ARYA 3VZGA 1J4SA 1XEZA 1XXQA 2BN0A 3VZEA 4AK4A 1WS5C 1DLCA 3LL2A 1J4UA 1WS4C 3WOCA 4MQ0A 3R51A 1WS5A 4MOAA
chains in the Genus database with same CATH topology
3APAA 3LKYA 4DDNA 5J4XA 4R6QA 3AQGA 3LL0A 3LLZA 3VY7A 4AKCA 1OUWA 2HYQA 1KU8A 1UGYC 3VY6A 3R52A 5J50A 1WS4A 1UGYA 4PIKA 3R50A 3MITA 4AKDA 4PITA 5EXGA 1TP8A 1UH0A 1ZGRA 3MIVA 4AKBA 4R6NA 1X1VA 3LL1A 3P8SA 1C3MA 1J4TA 1JOTA 1UGWC 3WOBA 2NUOA 1UGXA 3O44A 2HYRA 2JZ4A 4PIUA 2BMYA 4R6PA 1VBPA 5JM1A 1KUJA 5BN6E 1C3NA 1TOQA 2GTYA 4R6RA 2BMZA 4PIFA 1C3KA 5AV7A 3VZFA 2GUXA 4WOGA 3LLYA 4R6OA 3LM1A 1VBOA 2GUDA 2GUEA 1XXRA 2GUCA 5J51A 1M26A 1ZGSA 1JACA 4GX7A 5J4TA 1PXDA 1UGWA 1UH1A 3MIUA 2NU5A 3VZGA 1J4SA 1XEZA 1XXQA 2BN0A 3VZEA 4AK4A 1WS5C 3LL2A 1J4UA 1WS4C 3WOCA 4MQ0A 3R51A 1WS5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3APA A;  3LKY A;  4DDN A;  5J4X A;  4R6Q A;  3AQG A;  3LL0 A;  3LLZ A;  3VY7 A;  4AKC A;  1OUW A;  2HYQ A;  1KU8 A;  1UGY C;  3VY6 A;  3R52 A;  5J50 A;  1WS4 A;  1UGY A;  4PIK A;  3R50 A;  3MIT A;  4AKD A;  4PIT A;  5EXG A;  1TP8 A;  1UH0 A;  1ZGR A;  3MIV A;  4AKB A;  4R6N A;  1X1V A;  3LL1 A;  3P8S A;  1C3M A;  1J4T A;  1JOT A;  1UGW C;  3WOB A;  2NUO A;  1UGX A;  3O44 A;  2HYR A;  2JZ4 A;  4PIU A;  2BMY A;  4R6P A;  1VBP A;  5JM1 A;  1KUJ A;  5BN6 E;  1C3N A;  1TOQ A;  2GTY A;  4R6R A;  2BMZ A;  4PIF A;  1C3K A;  5AV7 A;  3VZF A;  2GUX A;  4WOG A;  3LLY A;  4R6O A;  3LM1 A;  1VBO A;  2GUD A;  2GUE A;  1XXR A;  2GUC A;  5J51 A;  1M26 A;  1ZGS A;  1JAC A;  4GX7 A;  5J4T A;  1PXD A;  1UGW A;  1UH1 A;  3MIU A;  2NU5 A;  3VZG A;  1J4S A;  1XEZ A;  1XXQ A;  2BN0 A;  3VZE A;  4AK4 A;  1WS5 C;  3LL2 A;  1J4U A;  1WS4 C;  3WOC A;  4MQ0 A;  3R51 A;  1WS5 A; 
#chains in the Genus database with same CATH topology
 3EB7 A;  2QP2 A;  3APA A;  3LKY A;  3TOW A;  5J4X A;  4DDN A;  4R6Q A;  3AQG A;  3LL0 A;  3LLZ A;  3VY7 A;  1VMO A;  4AKC A;  1OUW A;  1CIY A;  2HYQ A;  1KU8 A;  1UGY C;  3VY6 A;  3R52 A;  5J50 A;  1WS4 A;  4ARX A;  2C9K A;  4QX2 A;  1UGY A;  4PIK A;  3R50 A;  3MIT A;  4AKD A;  4QX3 A;  4QX1 A;  4PIT A;  5EXG A;  1TP8 A;  4D8M A;  1UH0 A;  1ZGR A;  1I5P A;  3MIV A;  4AKB A;  4R6N A;  1JI6 A;  1X1V A;  3LL1 A;  3P8S A;  1C3M A;  1J4T A;  1JOT A;  1UGW C;  3WOB A;  2NUO A;  1UGX A;  3O44 A;  2HYR A;  2JZ4 A;  4PIU A;  2BMY A;  4R6P A;  1VBP A;  1W99 A;  5JM1 A;  1KUJ A;  5BN6 E;  1C3N A;  1TOQ A;  2GTY A;  4R6R A;  2BMZ A;  4QX0 A;  4PIF A;  1C3K A;  4W8J A;  5AV7 A;  3VZF A;  2GUX A;  4WOG A;  3LLY A;  4R6O A;  3LM1 A;  1VBO A;  2GUD A;  2GUE A;  1XXR A;  2GUC A;  5J51 A;  1M26 A;  1ZGS A;  1JAC A;  4GX7 A;  5J4T A;  1PXD A;  1UGW A;  1UH1 A;  3MIU A;  2NU5 A;  4ARY A;  3VZG A;  1J4S A;  1XEZ A;  1XXQ A;  2BN0 A;  3VZE A;  4AK4 A;  1WS5 C;  1DLC A;  3LL2 A;  1J4U A;  1WS4 C;  3WOC A;  4MQ0 A;  3R51 A;  1WS5 A;  4MOA A; 
#chains in the Genus database with same CATH homology
 3APA A;  3LKY A;  4DDN A;  5J4X A;  4R6Q A;  3AQG A;  3LL0 A;  3LLZ A;  3VY7 A;  4AKC A;  1OUW A;  2HYQ A;  1KU8 A;  1UGY C;  3VY6 A;  3R52 A;  5J50 A;  1WS4 A;  1UGY A;  4PIK A;  3R50 A;  3MIT A;  4AKD A;  4PIT A;  5EXG A;  1TP8 A;  1UH0 A;  1ZGR A;  3MIV A;  4AKB A;  4R6N A;  1X1V A;  3LL1 A;  3P8S A;  1C3M A;  1J4T A;  1JOT A;  1UGW C;  3WOB A;  2NUO A;  1UGX A;  3O44 A;  2HYR A;  2JZ4 A;  4PIU A;  2BMY A;  4R6P A;  1VBP A;  5JM1 A;  1KUJ A;  5BN6 E;  1C3N A;  1TOQ A;  2GTY A;  4R6R A;  2BMZ A;  4PIF A;  1C3K A;  5AV7 A;  3VZF A;  2GUX A;  4WOG A;  3LLY A;  4R6O A;  3LM1 A;  1VBO A;  2GUD A;  2GUE A;  1XXR A;  2GUC A;  5J51 A;  1M26 A;  1ZGS A;  1JAC A;  4GX7 A;  5J4T A;  1PXD A;  1UGW A;  1UH1 A;  3MIU A;  2NU5 A;  3VZG A;  1J4S A;  1XEZ A;  1XXQ A;  2BN0 A;  3VZE A;  4AK4 A;  1WS5 C;  3LL2 A;  1J4U A;  1WS4 C;  3WOC A;  4MQ0 A;  3R51 A;  1WS5 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...