4R6NA

Jacalin-carbohydrate interactions. distortion of the ligand as a determinant of affinity
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Jacalin-carbohydrate interactions: distortion of the ligand molecule as a determinant of affinity.
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
total genus 31
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2014-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 4r6nA00
1J4TA 2GUXA 1XEZA 3MIVA 3LKYA 3LLZA 1PXDA 5JM1A 2GUEA 1ZGSA 5BN6E 4DDNA 3LL2A 5J4TA 1TOQA 2JZ4A 3R50A 4PIKA 1WS4C 3MITA 4R6PA 1VBPA 2BMYA 1UH1A 2BMZA 4PITA 1UGYC 3R51A 4AKBA 5J4XA 2BN0A 3APAA 1JACA 4AKDA 3LLYA 3LL0A 4R6NA 2HYQA 5AV7A 4PIFA 3VZGA 5J51A 4WOGA 4PIUA 4R6RA 3MIUA 3VY7A 1VBOA 4R6OA 1C3MA 4MQ0A 2GUDA 1C3NA 5J50A 3R52A 3WOCA 5EXGA 1UGXA 1J4SA 1UGWA 1ZGRA 1X1VA 1KUJA 1TP8A 1KU8A 4R6QA 3VZEA 1JOTA 3WOBA 3P8SA 3O44A 4AKCA 4AK4A 1XXQA 2GTYA 1WS4A 2NU5A 1UH0A 1UGWC 1OUWA 3AQGA 3LL1A 1M26A 3LM1A 1J4UA 3VY6A 2HYRA 1XXRA 2GUCA 1C3KA 3VZFA 1UGYA 1WS5A 1WS5C 2NUOA 4GX7A
chains in the Genus database with same CATH superfamily
1J4TA 2GUXA 4QX1A 1XEZA 3MIVA 4W8JA 4ARXA 3LKYA 3LLZA 1PXDA 5JM1A 2GUEA 1ZGSA 2QP2A 5BN6E 4DDNA 3LL2A 5J4TA 1TOQA 2JZ4A 1JI6A 4ARYA 4QX2A 3R50A 4PIKA 1WS4C 3MITA 4R6PA 2C9KA 1VBPA 3EB7A 2BMYA 1UH1A 2BMZA 4QX0A 4PITA 1UGYC 3R51A 4AKBA 5J4XA 2BN0A 3APAA 1JACA 4AKDA 3LLYA 4D8MA 3LL0A 3TOWA 4R6NA 2HYQA 1VMOA 1DLCA 5AV7A 4PIFA 4MOAA 3VZGA 5J51A 4WOGA 4PIUA 4R6RA 3MIUA 3VY7A 1VBOA 4R6OA 1C3MA 4MQ0A 1I5PA 2GUDA 1C3NA 5J50A 3R52A 3WOCA 5EXGA 1UGXA 1J4SA 1UGWA 1CIYA 1ZGRA 1X1VA 4QX3A 1KUJA 1TP8A 1KU8A 4R6QA 3VZEA 1JOTA 3WOBA 3P8SA 3O44A 4AKCA 4AK4A 1XXQA 2GTYA 1WS4A 2NU5A 1UH0A 1UGWC 1OUWA 3AQGA 3LL1A 1W99A 1M26A 3LM1A 1J4UA 3VY6A 2HYRA 1XXRA 2GUCA 1C3KA 3VZFA 1UGYA 1WS5A 1WS5C 2NUOA 4GX7A
chains in the Genus database with same CATH topology
1J4TA 2GUXA 1XEZA 3MIVA 3LKYA 3LLZA 1PXDA 5JM1A 2GUEA 1ZGSA 5BN6E 4DDNA 3LL2A 5J4TA 1TOQA 2JZ4A 3R50A 4PIKA 1WS4C 3MITA 4R6PA 1VBPA 2BMYA 1UH1A 2BMZA 4PITA 1UGYC 3R51A 4AKBA 5J4XA 2BN0A 3APAA 1JACA 4AKDA 3LLYA 3LL0A 4R6NA 2HYQA 5AV7A 4PIFA 3VZGA 5J51A 4WOGA 4PIUA 4R6RA 3MIUA 3VY7A 1VBOA 4R6OA 1C3MA 4MQ0A 2GUDA 1C3NA 5J50A 3R52A 3WOCA 5EXGA 1UGXA 1J4SA 1UGWA 1ZGRA 1X1VA 1KUJA 1TP8A 1KU8A 4R6QA 3VZEA 1JOTA 3WOBA 3P8SA 3O44A 4AKCA 4AK4A 1XXQA 2GTYA 1WS4A 2NU5A 1UH0A 1UGWC 1OUWA 3AQGA 3LL1A 1M26A 3LM1A 1J4UA 3VY6A 2HYRA 1XXRA 2GUCA 1C3KA 3VZFA 1UGYA 1WS5A 1WS5C 2NUOA 4GX7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J4T A;  2GUX A;  1XEZ A;  3MIV A;  3LKY A;  3LLZ A;  1PXD A;  5JM1 A;  2GUE A;  1ZGS A;  5BN6 E;  4DDN A;  3LL2 A;  5J4T A;  1TOQ A;  2JZ4 A;  3R50 A;  4PIK A;  1WS4 C;  3MIT A;  4R6P A;  1VBP A;  2BMY A;  1UH1 A;  2BMZ A;  4PIT A;  1UGY C;  3R51 A;  4AKB A;  5J4X A;  2BN0 A;  3APA A;  1JAC A;  4AKD A;  3LLY A;  3LL0 A;  4R6N A;  2HYQ A;  5AV7 A;  4PIF A;  3VZG A;  5J51 A;  4WOG A;  4PIU A;  4R6R A;  3MIU A;  3VY7 A;  1VBO A;  4R6O A;  1C3M A;  4MQ0 A;  2GUD A;  1C3N A;  5J50 A;  3R52 A;  3WOC A;  5EXG A;  1UGX A;  1J4S A;  1UGW A;  1ZGR A;  1X1V A;  1KUJ A;  1TP8 A;  1KU8 A;  4R6Q A;  3VZE A;  1JOT A;  3WOB A;  3P8S A;  3O44 A;  4AKC A;  4AK4 A;  1XXQ A;  2GTY A;  1WS4 A;  2NU5 A;  1UH0 A;  1UGW C;  1OUW A;  3AQG A;  3LL1 A;  1M26 A;  3LM1 A;  1J4U A;  3VY6 A;  2HYR A;  1XXR A;  2GUC A;  1C3K A;  3VZF A;  1UGY A;  1WS5 A;  1WS5 C;  2NUO A;  4GX7 A; 
#chains in the Genus database with same CATH topology
 1J4T A;  2GUX A;  4QX1 A;  1XEZ A;  3MIV A;  4W8J A;  4ARX A;  3LKY A;  3LLZ A;  1PXD A;  5JM1 A;  2GUE A;  1ZGS A;  2QP2 A;  5BN6 E;  4DDN A;  3LL2 A;  5J4T A;  1TOQ A;  2JZ4 A;  1JI6 A;  4ARY A;  4QX2 A;  3R50 A;  4PIK A;  1WS4 C;  3MIT A;  4R6P A;  2C9K A;  1VBP A;  3EB7 A;  2BMY A;  1UH1 A;  2BMZ A;  4QX0 A;  4PIT A;  1UGY C;  3R51 A;  4AKB A;  5J4X A;  2BN0 A;  3APA A;  1JAC A;  4AKD A;  3LLY A;  4D8M A;  3LL0 A;  3TOW A;  4R6N A;  2HYQ A;  1VMO A;  1DLC A;  5AV7 A;  4PIF A;  4MOA A;  3VZG A;  5J51 A;  4WOG A;  4PIU A;  4R6R A;  3MIU A;  3VY7 A;  1VBO A;  4R6O A;  1C3M A;  4MQ0 A;  1I5P A;  2GUD A;  1C3N A;  5J50 A;  3R52 A;  3WOC A;  5EXG A;  1UGX A;  1J4S A;  1UGW A;  1CIY A;  1ZGR A;  1X1V A;  4QX3 A;  1KUJ A;  1TP8 A;  1KU8 A;  4R6Q A;  3VZE A;  1JOT A;  3WOB A;  3P8S A;  3O44 A;  4AKC A;  4AK4 A;  1XXQ A;  2GTY A;  1WS4 A;  2NU5 A;  1UH0 A;  1UGW C;  1OUW A;  3AQG A;  3LL1 A;  1W99 A;  1M26 A;  3LM1 A;  1J4U A;  3VY6 A;  2HYR A;  1XXR A;  2GUC A;  1C3K A;  3VZF A;  1UGY A;  1WS5 A;  1WS5 C;  2NUO A;  4GX7 A; 
#chains in the Genus database with same CATH homology
 1J4T A;  2GUX A;  1XEZ A;  3MIV A;  3LKY A;  3LLZ A;  1PXD A;  5JM1 A;  2GUE A;  1ZGS A;  5BN6 E;  4DDN A;  3LL2 A;  5J4T A;  1TOQ A;  2JZ4 A;  3R50 A;  4PIK A;  1WS4 C;  3MIT A;  4R6P A;  1VBP A;  2BMY A;  1UH1 A;  2BMZ A;  4PIT A;  1UGY C;  3R51 A;  4AKB A;  5J4X A;  2BN0 A;  3APA A;  1JAC A;  4AKD A;  3LLY A;  3LL0 A;  4R6N A;  2HYQ A;  5AV7 A;  4PIF A;  3VZG A;  5J51 A;  4WOG A;  4PIU A;  4R6R A;  3MIU A;  3VY7 A;  1VBO A;  4R6O A;  1C3M A;  4MQ0 A;  2GUD A;  1C3N A;  5J50 A;  3R52 A;  3WOC A;  5EXG A;  1UGX A;  1J4S A;  1UGW A;  1ZGR A;  1X1V A;  1KUJ A;  1TP8 A;  1KU8 A;  4R6Q A;  3VZE A;  1JOT A;  3WOB A;  3P8S A;  3O44 A;  4AKC A;  4AK4 A;  1XXQ A;  2GTY A;  1WS4 A;  2NU5 A;  1UH0 A;  1UGW C;  1OUW A;  3AQG A;  3LL1 A;  1M26 A;  3LM1 A;  1J4U A;  3VY6 A;  2HYR A;  1XXR A;  2GUC A;  1C3K A;  3VZF A;  1UGY A;  1WS5 A;  1WS5 C;  2NUO A;  4GX7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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