4R6NA

Jacalin-carbohydrate interactions. distortion of the ligand as a determinant of affinity
Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-5)S11 (124-132)S4 (37-44)TIV1 (33-36)S2 (11-19)S7 (78-88)TI1 (20-23)S3 (25-34)S10 (112-120)TVIa1 (59-62)TIV2 (60-63)TI2 (88-91)S8 (92-97)TVIII1 (61-64)S6 (65-75)TVIII2 (108-111)TIV3 (74-77)TIV4 (120-123)S9 (102-107)S5 (52-57)Updating...
connected with : NaN
molecule tags Sugar binding protein
publication title Jacalin-carbohydrate interactions: distortion of the ligand molecule as a determinant of affinity.
pubmed doi rcsb
molecule keywords Agglutinin alpha chain
total genus 31
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2014-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 4r6nA00
3WOCA 3VZEA 1UGWC 2HYRA 1TOQA 2BMYA 2GTYA 1JACA 1UGYC 3LLZA 1J4TA 2NUOA 4PIKA 2GUEA 2BMZA 1C3NA 2JZ4A 5J4XA 3MIUA 4DDNA 5EXGA 1C3MA 2GUCA 5J51A 1WS5C 1UH0A 5JM1A 3AQGA 1WS4C 1J4UA 5AV7A 3LL0A 4WOGA 3R50A 1TP8A 5J50A 1VBOA 3VY6A 5BN6E 3P8SA 3LL2A 1UH1A 4AKDA 1XEZA 3WOBA 1KU8A 1UGWA 2BN0A 1UGXA 3LLYA 4GX7A 5J4TA 4AKCA 1UGYA 4R6RA 4PIFA 4PITA 1X1VA 1M26A 1J4SA 1ZGRA 3VY7A 3O44A 3LL1A 1KUJA 2GUXA 3MITA 2NU5A 3VZFA 3R52A 1WS5A 1WS4A 3APAA 4R6OA 4R6QA 1VBPA 3MIVA 4AK4A 4AKBA 2GUDA 2HYQA 4MQ0A 3LM1A 1XXRA 1OUWA 1C3KA 3VZGA 1JOTA 4PIUA 1PXDA 1ZGSA 3R51A 1XXQA 3LKYA 4R6NA 4R6PA
chains in the Genus database with same CATH superfamily
3WOCA 3VZEA 1UGWC 2HYRA 1TOQA 2BMYA 2GTYA 1JACA 1UGYC 3LLZA 1J4TA 3TOWA 2NUOA 4PIKA 2GUEA 2BMZA 1C3NA 1I5PA 2JZ4A 5J4XA 3MIUA 4DDNA 5EXGA 1CIYA 1C3MA 2GUCA 5J51A 4MOAA 1WS5C 1UH0A 4ARYA 5JM1A 3AQGA 1WS4C 1J4UA 5AV7A 3LL0A 4WOGA 3R50A 1TP8A 5J50A 1VBOA 1W99A 3VY6A 5BN6E 3P8SA 3LL2A 1UH1A 4AKDA 1XEZA 4QX3A 3WOBA 1KU8A 1UGWA 2BN0A 1UGXA 2C9KA 3LLYA 4GX7A 5J4TA 4AKCA 1UGYA 4R6RA 4PIFA 4ARXA 4PITA 1X1VA 4W8JA 3EB7A 1M26A 1J4SA 1ZGRA 3VY7A 3O44A 3LL1A 1KUJA 1DLCA 2GUXA 2NU5A 3VZFA 3R52A 1WS5A 4QX2A 3APAA 1WS4A 4R6OA 4QX1A 4R6QA 1VBPA 3MIVA 4AK4A 4AKBA 2GUDA 2HYQA 4MQ0A 3LM1A 1XXRA 4QX0A 2QP2A 1OUWA 1C3KA 3VZGA 1VMOA 4D8MA 1JOTA 4R6PA 4PIUA 1PXDA 1ZGSA 3R51A 1XXQA 3LKYA 4R6NA 1JI6A 3MITA
chains in the Genus database with same CATH topology
3WOCA 3VZEA 1UGWC 2HYRA 1TOQA 2BMYA 2GTYA 1JACA 1UGYC 3LLZA 1J4TA 2NUOA 4PIKA 2GUEA 2BMZA 1C3NA 2JZ4A 5J4XA 3MIUA 4DDNA 5EXGA 1C3MA 2GUCA 5J51A 1WS5C 1UH0A 5JM1A 3AQGA 1WS4C 1J4UA 5AV7A 3LL0A 4WOGA 3R50A 1TP8A 5J50A 1VBOA 3VY6A 5BN6E 3P8SA 3LL2A 1UH1A 4AKDA 1XEZA 3WOBA 1KU8A 1UGWA 2BN0A 1UGXA 3LLYA 4GX7A 5J4TA 4AKCA 1UGYA 4R6RA 4PIFA 4PITA 1X1VA 1M26A 1J4SA 1ZGRA 3VY7A 3O44A 3LL1A 1KUJA 2GUXA 3MITA 2NU5A 3VZFA 3R52A 1WS5A 1WS4A 3APAA 4R6OA 4R6QA 1VBPA 3MIVA 4AK4A 4AKBA 2GUDA 2HYQA 4MQ0A 3LM1A 1XXRA 1OUWA 1C3KA 3VZGA 1JOTA 4PIUA 1PXDA 1ZGSA 3R51A 1XXQA 3LKYA 4R6NA 4R6PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WOC A;  3VZE A;  1UGW C;  2HYR A;  1TOQ A;  2BMY A;  2GTY A;  1JAC A;  1UGY C;  3LLZ A;  1J4T A;  2NUO A;  4PIK A;  2GUE A;  2BMZ A;  1C3N A;  2JZ4 A;  5J4X A;  3MIU A;  4DDN A;  5EXG A;  1C3M A;  2GUC A;  5J51 A;  1WS5 C;  1UH0 A;  5JM1 A;  3AQG A;  1WS4 C;  1J4U A;  5AV7 A;  3LL0 A;  4WOG A;  3R50 A;  1TP8 A;  5J50 A;  1VBO A;  3VY6 A;  5BN6 E;  3P8S A;  3LL2 A;  1UH1 A;  4AKD A;  1XEZ A;  3WOB A;  1KU8 A;  1UGW A;  2BN0 A;  1UGX A;  3LLY A;  4GX7 A;  5J4T A;  4AKC A;  1UGY A;  4R6R A;  4PIF A;  4PIT A;  1X1V A;  1M26 A;  1J4S A;  1ZGR A;  3VY7 A;  3O44 A;  3LL1 A;  1KUJ A;  2GUX A;  3MIT A;  2NU5 A;  3VZF A;  3R52 A;  1WS5 A;  1WS4 A;  3APA A;  4R6O A;  4R6Q A;  1VBP A;  3MIV A;  4AK4 A;  4AKB A;  2GUD A;  2HYQ A;  4MQ0 A;  3LM1 A;  1XXR A;  1OUW A;  1C3K A;  3VZG A;  1JOT A;  4PIU A;  1PXD A;  1ZGS A;  3R51 A;  1XXQ A;  3LKY A;  4R6N A;  4R6P A; 
#chains in the Genus database with same CATH topology
 3WOC A;  3VZE A;  1UGW C;  2HYR A;  1TOQ A;  2BMY A;  2GTY A;  1JAC A;  1UGY C;  3LLZ A;  1J4T A;  3TOW A;  2NUO A;  4PIK A;  2GUE A;  2BMZ A;  1C3N A;  1I5P A;  2JZ4 A;  5J4X A;  3MIU A;  4DDN A;  5EXG A;  1CIY A;  1C3M A;  2GUC A;  5J51 A;  4MOA A;  1WS5 C;  1UH0 A;  4ARY A;  5JM1 A;  3AQG A;  1WS4 C;  1J4U A;  5AV7 A;  3LL0 A;  4WOG A;  3R50 A;  1TP8 A;  5J50 A;  1VBO A;  1W99 A;  3VY6 A;  5BN6 E;  3P8S A;  3LL2 A;  1UH1 A;  4AKD A;  1XEZ A;  4QX3 A;  3WOB A;  1KU8 A;  1UGW A;  2BN0 A;  1UGX A;  2C9K A;  3LLY A;  4GX7 A;  5J4T A;  4AKC A;  1UGY A;  4R6R A;  4PIF A;  4ARX A;  4PIT A;  1X1V A;  4W8J A;  3EB7 A;  1M26 A;  1J4S A;  1ZGR A;  3VY7 A;  3O44 A;  3LL1 A;  1KUJ A;  1DLC A;  2GUX A;  2NU5 A;  3VZF A;  3R52 A;  1WS5 A;  4QX2 A;  3APA A;  1WS4 A;  4R6O A;  4QX1 A;  4R6Q A;  1VBP A;  3MIV A;  4AK4 A;  4AKB A;  2GUD A;  2HYQ A;  4MQ0 A;  3LM1 A;  1XXR A;  4QX0 A;  2QP2 A;  1OUW A;  1C3K A;  3VZG A;  1VMO A;  4D8M A;  1JOT A;  4R6P A;  4PIU A;  1PXD A;  1ZGS A;  3R51 A;  1XXQ A;  3LKY A;  4R6N A;  1JI6 A;  3MIT A; 
#chains in the Genus database with same CATH homology
 3WOC A;  3VZE A;  1UGW C;  2HYR A;  1TOQ A;  2BMY A;  2GTY A;  1JAC A;  1UGY C;  3LLZ A;  1J4T A;  2NUO A;  4PIK A;  2GUE A;  2BMZ A;  1C3N A;  2JZ4 A;  5J4X A;  3MIU A;  4DDN A;  5EXG A;  1C3M A;  2GUC A;  5J51 A;  1WS5 C;  1UH0 A;  5JM1 A;  3AQG A;  1WS4 C;  1J4U A;  5AV7 A;  3LL0 A;  4WOG A;  3R50 A;  1TP8 A;  5J50 A;  1VBO A;  3VY6 A;  5BN6 E;  3P8S A;  3LL2 A;  1UH1 A;  4AKD A;  1XEZ A;  3WOB A;  1KU8 A;  1UGW A;  2BN0 A;  1UGX A;  3LLY A;  4GX7 A;  5J4T A;  4AKC A;  1UGY A;  4R6R A;  4PIF A;  4PIT A;  1X1V A;  1M26 A;  1J4S A;  1ZGR A;  3VY7 A;  3O44 A;  3LL1 A;  1KUJ A;  2GUX A;  3MIT A;  2NU5 A;  3VZF A;  3R52 A;  1WS5 A;  1WS4 A;  3APA A;  4R6O A;  4R6Q A;  1VBP A;  3MIV A;  4AK4 A;  4AKB A;  2GUD A;  2HYQ A;  4MQ0 A;  3LM1 A;  1XXR A;  1OUW A;  1C3K A;  3VZG A;  1JOT A;  4PIU A;  1PXD A;  1ZGS A;  3R51 A;  1XXQ A;  3LKY A;  4R6N A;  4R6P A; 
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