4R6OA

Jacalin-carbohydrate interactions. distortion of the ligand as a determinant of affinity.
Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-5)S11 (124-132)S4 (37-44)TIV1 (33-36)S2 (11-19)S7 (78-88)TI1 (20-23)S3 (25-34)S10 (112-120)TVIa1 (59-62)TIV2 (60-63)TI2 (88-91)S8 (92-97)TVIII1 (61-64)S6 (65-75)TVIII2 (108-111)O1 (98-100)TIV4 (120-123)S9 (102-107)S5 (52-57)Updating...
connected with : NaN
molecule tags Sugar binding protein
publication title Jacalin-carbohydrate interactions: distortion of the ligand molecule as a determinant of affinity.
pubmed doi rcsb
molecule keywords Agglutinin alpha chain
total genus 30
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2014-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 4r6oA00
1TOQA 4R6QA 5J4XA 1PXDA 3R50A 3MIUA 4DDNA 3LL2A 1XXQA 1UGXA 2GUDA 3WOCA 1ZGSA 3LKYA 3VZEA 2HYQA 1KU8A 3WOBA 1TP8A 5J4TA 4R6RA 4AKDA 1X1VA 2GUXA 1WS4C 1UH0A 1XEZA 4R6NA 1OUWA 1C3NA 5EXGA 2HYRA 4MQ0A 5JM1A 3LLYA 1C3MA 2JZ4A 3LM1A 3O44A 1UGWA 1UGYC 4AK4A 5J50A 1M26A 1WS4A 1XXRA 1J4SA 1KUJA 1UGWC 3VZFA 3LL1A 3APAA 3MITA 4PIFA 5J51A 2NUOA 5BN6E 1UH1A 1JOTA 2GTYA 1J4TA 1VBOA 1WS5A 2GUCA 2NU5A 3VZGA 2BMYA 1ZGRA 1WS5C 5AV7A 2GUEA 1UGYA 1JACA 3R52A 4PIUA 2BMZA 3LL0A 4PIKA 4AKCA 1VBPA 4WOGA 3VY7A 3R51A 2BN0A 4AKBA 4GX7A 1J4UA 4PITA 4R6PA 3MIVA 3VY6A 1C3KA 4R6OA 3P8SA 3AQGA 3LLZA
chains in the Genus database with same CATH superfamily
1JI6A 1TOQA 4R6QA 5J4XA 1PXDA 3R50A 3MIUA 4DDNA 3LL2A 1XXQA 1UGXA 2GUDA 3WOCA 2QP2A 1ZGSA 1DLCA 3LKYA 3VZEA 2HYQA 1KU8A 3WOBA 1TP8A 5J4TA 4R6RA 4AKDA 4QX3A 1X1VA 2GUXA 1WS4C 1UH0A 4QX2A 1XEZA 4ARXA 4R6NA 1OUWA 1C3NA 5EXGA 2HYRA 4MQ0A 5JM1A 3LLYA 1C3MA 2JZ4A 3LM1A 3O44A 1UGWA 1UGYC 4AK4A 5J50A 1M26A 1WS4A 1XXRA 1J4SA 1KUJA 1UGWC 4QX0A 3VZFA 3LL1A 3APAA 3MITA 4PIFA 5J51A 2NUOA 5BN6E 1UH1A 1JOTA 1CIYA 2GTYA 1J4TA 1VBOA 4W8JA 4ARYA 1WS5A 2GUCA 2NU5A 3VZGA 2BMYA 1ZGRA 4D8MA 1WS5C 5AV7A 2GUEA 1UGYA 1JACA 3R52A 4PIUA 2BMZA 1I5PA 3LL0A 4PIKA 2C9KA 4AKCA 1VBPA 4WOGA 3VY7A 3R51A 2BN0A 4AKBA 1VMOA 3TOWA 4GX7A 1J4UA 3EB7A 4PITA 4R6PA 3MIVA 3VY6A 1C3KA 4MOAA 4QX1A 4R6OA 3P8SA 3AQGA 1W99A 3LLZA
chains in the Genus database with same CATH topology
1TOQA 4R6QA 5J4XA 1PXDA 3R50A 3MIUA 4DDNA 3LL2A 1XXQA 1UGXA 2GUDA 3WOCA 1ZGSA 3LKYA 3VZEA 2HYQA 1KU8A 3WOBA 1TP8A 5J4TA 4R6RA 4AKDA 1X1VA 2GUXA 1WS4C 1UH0A 1XEZA 4R6NA 1OUWA 1C3NA 5EXGA 2HYRA 4MQ0A 5JM1A 3LLYA 1C3MA 2JZ4A 3LM1A 3O44A 1UGWA 1UGYC 4AK4A 5J50A 1M26A 1WS4A 1XXRA 1J4SA 1KUJA 1UGWC 3VZFA 3LL1A 3APAA 3MITA 4PIFA 5J51A 2NUOA 5BN6E 1UH1A 1JOTA 2GTYA 1J4TA 1VBOA 1WS5A 2GUCA 2NU5A 3VZGA 2BMYA 1ZGRA 1WS5C 5AV7A 2GUEA 1UGYA 1JACA 3R52A 4PIUA 2BMZA 3LL0A 4PIKA 4AKCA 1VBPA 4WOGA 3VY7A 3R51A 2BN0A 4AKBA 4GX7A 1J4UA 4PITA 4R6PA 3MIVA 3VY6A 1C3KA 4R6OA 3P8SA 3AQGA 3LLZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TOQ A;  4R6Q A;  5J4X A;  1PXD A;  3R50 A;  3MIU A;  4DDN A;  3LL2 A;  1XXQ A;  1UGX A;  2GUD A;  3WOC A;  1ZGS A;  3LKY A;  3VZE A;  2HYQ A;  1KU8 A;  3WOB A;  1TP8 A;  5J4T A;  4R6R A;  4AKD A;  1X1V A;  2GUX A;  1WS4 C;  1UH0 A;  1XEZ A;  4R6N A;  1OUW A;  1C3N A;  5EXG A;  2HYR A;  4MQ0 A;  5JM1 A;  3LLY A;  1C3M A;  2JZ4 A;  3LM1 A;  3O44 A;  1UGW A;  1UGY C;  4AK4 A;  5J50 A;  1M26 A;  1WS4 A;  1XXR A;  1J4S A;  1KUJ A;  1UGW C;  3VZF A;  3LL1 A;  3APA A;  3MIT A;  4PIF A;  5J51 A;  2NUO A;  5BN6 E;  1UH1 A;  1JOT A;  2GTY A;  1J4T A;  1VBO A;  1WS5 A;  2GUC A;  2NU5 A;  3VZG A;  2BMY A;  1ZGR A;  1WS5 C;  5AV7 A;  2GUE A;  1UGY A;  1JAC A;  3R52 A;  4PIU A;  2BMZ A;  3LL0 A;  4PIK A;  4AKC A;  1VBP A;  4WOG A;  3VY7 A;  3R51 A;  2BN0 A;  4AKB A;  4GX7 A;  1J4U A;  4PIT A;  4R6P A;  3MIV A;  3VY6 A;  1C3K A;  4R6O A;  3P8S A;  3AQG A;  3LLZ A; 
#chains in the Genus database with same CATH topology
 1JI6 A;  1TOQ A;  4R6Q A;  5J4X A;  1PXD A;  3R50 A;  3MIU A;  4DDN A;  3LL2 A;  1XXQ A;  1UGX A;  2GUD A;  3WOC A;  2QP2 A;  1ZGS A;  1DLC A;  3LKY A;  3VZE A;  2HYQ A;  1KU8 A;  3WOB A;  1TP8 A;  5J4T A;  4R6R A;  4AKD A;  4QX3 A;  1X1V A;  2GUX A;  1WS4 C;  1UH0 A;  4QX2 A;  1XEZ A;  4ARX A;  4R6N A;  1OUW A;  1C3N A;  5EXG A;  2HYR A;  4MQ0 A;  5JM1 A;  3LLY A;  1C3M A;  2JZ4 A;  3LM1 A;  3O44 A;  1UGW A;  1UGY C;  4AK4 A;  5J50 A;  1M26 A;  1WS4 A;  1XXR A;  1J4S A;  1KUJ A;  1UGW C;  4QX0 A;  3VZF A;  3LL1 A;  3APA A;  3MIT A;  4PIF A;  5J51 A;  2NUO A;  5BN6 E;  1UH1 A;  1JOT A;  1CIY A;  2GTY A;  1J4T A;  1VBO A;  4W8J A;  4ARY A;  1WS5 A;  2GUC A;  2NU5 A;  3VZG A;  2BMY A;  1ZGR A;  4D8M A;  1WS5 C;  5AV7 A;  2GUE A;  1UGY A;  1JAC A;  3R52 A;  4PIU A;  2BMZ A;  1I5P A;  3LL0 A;  4PIK A;  2C9K A;  4AKC A;  1VBP A;  4WOG A;  3VY7 A;  3R51 A;  2BN0 A;  4AKB A;  1VMO A;  3TOW A;  4GX7 A;  1J4U A;  3EB7 A;  4PIT A;  4R6P A;  3MIV A;  3VY6 A;  1C3K A;  4MOA A;  4QX1 A;  4R6O A;  3P8S A;  3AQG A;  1W99 A;  3LLZ A; 
#chains in the Genus database with same CATH homology
 1TOQ A;  4R6Q A;  5J4X A;  1PXD A;  3R50 A;  3MIU A;  4DDN A;  3LL2 A;  1XXQ A;  1UGX A;  2GUD A;  3WOC A;  1ZGS A;  3LKY A;  3VZE A;  2HYQ A;  1KU8 A;  3WOB A;  1TP8 A;  5J4T A;  4R6R A;  4AKD A;  1X1V A;  2GUX A;  1WS4 C;  1UH0 A;  1XEZ A;  4R6N A;  1OUW A;  1C3N A;  5EXG A;  2HYR A;  4MQ0 A;  5JM1 A;  3LLY A;  1C3M A;  2JZ4 A;  3LM1 A;  3O44 A;  1UGW A;  1UGY C;  4AK4 A;  5J50 A;  1M26 A;  1WS4 A;  1XXR A;  1J4S A;  1KUJ A;  1UGW C;  3VZF A;  3LL1 A;  3APA A;  3MIT A;  4PIF A;  5J51 A;  2NUO A;  5BN6 E;  1UH1 A;  1JOT A;  2GTY A;  1J4T A;  1VBO A;  1WS5 A;  2GUC A;  2NU5 A;  3VZG A;  2BMY A;  1ZGR A;  1WS5 C;  5AV7 A;  2GUE A;  1UGY A;  1JAC A;  3R52 A;  4PIU A;  2BMZ A;  3LL0 A;  4PIK A;  4AKC A;  1VBP A;  4WOG A;  3VY7 A;  3R51 A;  2BN0 A;  4AKB A;  4GX7 A;  1J4U A;  4PIT A;  4R6P A;  3MIV A;  3VY6 A;  1C3K A;  4R6O A;  3P8S A;  3AQG A;  3LLZ A; 
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