4R6PA

Jacalin-carbohydrate interactions. distortion of the ligand as a determinant of affinity.
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Jacalin-carbohydrate interactions: distortion of the ligand molecule as a determinant of affinity.
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
total genus 30
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2014-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 4r6pA00
4AKDA 1PXDA 1KUJA 3LM1A 3VY7A 1KU8A 3R52A 1WS5C 4WOGA 4DDNA 3VZGA 1XEZA 4R6NA 3MITA 3VY6A 3P8SA 4R6OA 4PIKA 1X1VA 4R6QA 1WS4A 1ZGSA 1VBPA 4GX7A 1UGWC 2GUEA 2BMYA 3O44A 3LL0A 2NUOA 5J50A 1UGYA 1UH1A 4MQ0A 1JACA 1J4UA 2BMZA 3MIVA 5J4XA 4PITA 3LLZA 1WS4C 3MIUA 3LKYA 3VZFA 2BN0A 1XXRA 5AV7A 2NU5A 3WOCA 4AK4A 1C3MA 2GUXA 5J51A 3LLYA 5JM1A 4R6PA 1M26A 3APAA 1J4TA 1TP8A 2GUDA 4AKBA 4PIFA 1VBOA 3VZEA 1OUWA 3WOBA 1UGYC 1C3KA 1UGWA 1JOTA 3R50A 1XXQA 4R6RA 5EXGA 1J4SA 1TOQA 1WS5A 3LL1A 3R51A 3LL2A 2HYRA 1ZGRA 5BN6E 2JZ4A 4PIUA 5J4TA 1UH0A 1C3NA 3AQGA 1UGXA 4AKCA 2GTYA 2GUCA 2HYQA
chains in the Genus database with same CATH superfamily
4AKDA 1PXDA 1KUJA 4QX2A 3LM1A 4ARYA 3VY7A 3R52A 1KU8A 1WS5C 4WOGA 4DDNA 1DLCA 3VZGA 1XEZA 4R6NA 3MITA 3VY6A 3P8SA 4R6OA 4W8JA 4PIKA 1X1VA 4D8MA 4R6QA 1WS4A 1ZGSA 3TOWA 1VBPA 4GX7A 1UGWC 2GUEA 2BMYA 3O44A 3LL0A 4QX0A 2NUOA 5J50A 1UGYA 1UH1A 4MQ0A 1JACA 1J4UA 2BMZA 3MIVA 5J4XA 4PITA 3LLZA 1WS4C 3MIUA 3LKYA 3VZFA 2BN0A 1XXRA 4QX3A 5AV7A 2NU5A 3WOCA 4AK4A 4QX1A 2QP2A 1C3MA 1CIYA 2GUXA 1VMOA 5J51A 3LLYA 5JM1A 4R6PA 3EB7A 1M26A 3APAA 1J4TA 4MOAA 1TP8A 1I5PA 2GUDA 4AKBA 4PIFA 1VBOA 3VZEA 1OUWA 3WOBA 1UGYC 1C3KA 1UGWA 1JOTA 1JI6A 3R50A 1XXQA 4R6RA 5EXGA 1J4SA 2C9KA 4ARXA 1TOQA 1WS5A 3LL1A 3R51A 3LL2A 2HYRA 1ZGRA 5BN6E 2JZ4A 4PIUA 5J4TA 1UH0A 1C3NA 3AQGA 1W99A 1UGXA 4AKCA 2GTYA 2GUCA 2HYQA
chains in the Genus database with same CATH topology
4AKDA 1PXDA 1KUJA 3LM1A 3VY7A 1KU8A 3R52A 1WS5C 4WOGA 4DDNA 3VZGA 1XEZA 4R6NA 3MITA 3VY6A 3P8SA 4R6OA 4PIKA 1X1VA 4R6QA 1WS4A 1ZGSA 1VBPA 4GX7A 1UGWC 2GUEA 2BMYA 3O44A 3LL0A 2NUOA 5J50A 1UGYA 1UH1A 4MQ0A 1JACA 1J4UA 2BMZA 3MIVA 5J4XA 4PITA 3LLZA 1WS4C 3MIUA 3LKYA 3VZFA 2BN0A 1XXRA 5AV7A 2NU5A 3WOCA 4AK4A 1C3MA 2GUXA 5J51A 3LLYA 5JM1A 4R6PA 1M26A 3APAA 1J4TA 1TP8A 2GUDA 4AKBA 4PIFA 1VBOA 3VZEA 1OUWA 3WOBA 1UGYC 1C3KA 1UGWA 1JOTA 3R50A 1XXQA 4R6RA 5EXGA 1J4SA 1TOQA 1WS5A 3LL1A 3R51A 3LL2A 2HYRA 1ZGRA 5BN6E 2JZ4A 4PIUA 5J4TA 1UH0A 1C3NA 3AQGA 1UGXA 4AKCA 2GTYA 2GUCA 2HYQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AKD A;  1PXD A;  1KUJ A;  3LM1 A;  3VY7 A;  1KU8 A;  3R52 A;  1WS5 C;  4WOG A;  4DDN A;  3VZG A;  1XEZ A;  4R6N A;  3MIT A;  3VY6 A;  3P8S A;  4R6O A;  4PIK A;  1X1V A;  4R6Q A;  1WS4 A;  1ZGS A;  1VBP A;  4GX7 A;  1UGW C;  2GUE A;  2BMY A;  3O44 A;  3LL0 A;  2NUO A;  5J50 A;  1UGY A;  1UH1 A;  4MQ0 A;  1JAC A;  1J4U A;  2BMZ A;  3MIV A;  5J4X A;  4PIT A;  3LLZ A;  1WS4 C;  3MIU A;  3LKY A;  3VZF A;  2BN0 A;  1XXR A;  5AV7 A;  2NU5 A;  3WOC A;  4AK4 A;  1C3M A;  2GUX A;  5J51 A;  3LLY A;  5JM1 A;  4R6P A;  1M26 A;  3APA A;  1J4T A;  1TP8 A;  2GUD A;  4AKB A;  4PIF A;  1VBO A;  3VZE A;  1OUW A;  3WOB A;  1UGY C;  1C3K A;  1UGW A;  1JOT A;  3R50 A;  1XXQ A;  4R6R A;  5EXG A;  1J4S A;  1TOQ A;  1WS5 A;  3LL1 A;  3R51 A;  3LL2 A;  2HYR A;  1ZGR A;  5BN6 E;  2JZ4 A;  4PIU A;  5J4T A;  1UH0 A;  1C3N A;  3AQG A;  1UGX A;  4AKC A;  2GTY A;  2GUC A;  2HYQ A; 
#chains in the Genus database with same CATH topology
 4AKD A;  1PXD A;  1KUJ A;  4QX2 A;  3LM1 A;  4ARY A;  3VY7 A;  3R52 A;  1KU8 A;  1WS5 C;  4WOG A;  4DDN A;  1DLC A;  3VZG A;  1XEZ A;  4R6N A;  3MIT A;  3VY6 A;  3P8S A;  4R6O A;  4W8J A;  4PIK A;  1X1V A;  4D8M A;  4R6Q A;  1WS4 A;  1ZGS A;  3TOW A;  1VBP A;  4GX7 A;  1UGW C;  2GUE A;  2BMY A;  3O44 A;  3LL0 A;  4QX0 A;  2NUO A;  5J50 A;  1UGY A;  1UH1 A;  4MQ0 A;  1JAC A;  1J4U A;  2BMZ A;  3MIV A;  5J4X A;  4PIT A;  3LLZ A;  1WS4 C;  3MIU A;  3LKY A;  3VZF A;  2BN0 A;  1XXR A;  4QX3 A;  5AV7 A;  2NU5 A;  3WOC A;  4AK4 A;  4QX1 A;  2QP2 A;  1C3M A;  1CIY A;  2GUX A;  1VMO A;  5J51 A;  3LLY A;  5JM1 A;  4R6P A;  3EB7 A;  1M26 A;  3APA A;  1J4T A;  4MOA A;  1TP8 A;  1I5P A;  2GUD A;  4AKB A;  4PIF A;  1VBO A;  3VZE A;  1OUW A;  3WOB A;  1UGY C;  1C3K A;  1UGW A;  1JOT A;  1JI6 A;  3R50 A;  1XXQ A;  4R6R A;  5EXG A;  1J4S A;  2C9K A;  4ARX A;  1TOQ A;  1WS5 A;  3LL1 A;  3R51 A;  3LL2 A;  2HYR A;  1ZGR A;  5BN6 E;  2JZ4 A;  4PIU A;  5J4T A;  1UH0 A;  1C3N A;  3AQG A;  1W99 A;  1UGX A;  4AKC A;  2GTY A;  2GUC A;  2HYQ A; 
#chains in the Genus database with same CATH homology
 4AKD A;  1PXD A;  1KUJ A;  3LM1 A;  3VY7 A;  1KU8 A;  3R52 A;  1WS5 C;  4WOG A;  4DDN A;  3VZG A;  1XEZ A;  4R6N A;  3MIT A;  3VY6 A;  3P8S A;  4R6O A;  4PIK A;  1X1V A;  4R6Q A;  1WS4 A;  1ZGS A;  1VBP A;  4GX7 A;  1UGW C;  2GUE A;  2BMY A;  3O44 A;  3LL0 A;  2NUO A;  5J50 A;  1UGY A;  1UH1 A;  4MQ0 A;  1JAC A;  1J4U A;  2BMZ A;  3MIV A;  5J4X A;  4PIT A;  3LLZ A;  1WS4 C;  3MIU A;  3LKY A;  3VZF A;  2BN0 A;  1XXR A;  5AV7 A;  2NU5 A;  3WOC A;  4AK4 A;  1C3M A;  2GUX A;  5J51 A;  3LLY A;  5JM1 A;  4R6P A;  1M26 A;  3APA A;  1J4T A;  1TP8 A;  2GUD A;  4AKB A;  4PIF A;  1VBO A;  3VZE A;  1OUW A;  3WOB A;  1UGY C;  1C3K A;  1UGW A;  1JOT A;  3R50 A;  1XXQ A;  4R6R A;  5EXG A;  1J4S A;  1TOQ A;  1WS5 A;  3LL1 A;  3R51 A;  3LL2 A;  2HYR A;  1ZGR A;  5BN6 E;  2JZ4 A;  4PIU A;  5J4T A;  1UH0 A;  1C3N A;  3AQG A;  1UGX A;  4AKC A;  2GTY A;  2GUC A;  2HYQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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