4R6QA

Jacalin-carbohydrate interactions. distortion of the ligand as a determinant of affinity.
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Jacalin-carbohydrate interactions: distortion of the ligand molecule as a determinant of affinity.
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
total genus 30
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2014-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 4r6qA00
3WOCA 3R52A 4AKDA 1VBPA 4AKCA 1ZGRA 3VY6A 4MQ0A 3LLZA 2NU5A 3VY7A 2GUXA 1WS5A 1JOTA 4AKBA 5EXGA 3VZEA 2JZ4A 1J4UA 2GTYA 1UGYA 3APAA 1UGYC 5J4TA 2GUCA 1C3MA 3AQGA 4GX7A 3LL2A 4PITA 3VZFA 1TP8A 2BMZA 1WS4A 3MIVA 4R6OA 4R6PA 1WS4C 1WS5C 1KU8A 3VZGA 2GUDA 2GUEA 5BN6E 1PXDA 3O44A 1KUJA 1VBOA 4WOGA 5JM1A 1JACA 5J50A 1J4TA 1C3KA 4PIFA 1J4SA 2BN0A 4AK4A 4R6QA 3P8SA 1UGXA 1X1VA 3LL1A 2NUOA 4DDNA 1UH0A 3R50A 4R6NA 1TOQA 3LL0A 3WOBA 5J4XA 4PIKA 1XXRA 3R51A 3LM1A 1ZGSA 4PIUA 2HYQA 5AV7A 3LLYA 3LKYA 1UH1A 3MIUA 1UGWA 3MITA 5J51A 1M26A 1UGWC 1C3NA 1XXQA 2HYRA 2BMYA 1OUWA 4R6RA 1XEZA
chains in the Genus database with same CATH superfamily
3WOCA 3R52A 4W8JA 4AKDA 1VBPA 1CIYA 4QX1A 4AKCA 1ZGRA 3VY6A 4MQ0A 2QP2A 3LLZA 2NU5A 1I5PA 3VY7A 2GUXA 1WS5A 1JOTA 4AKBA 5EXGA 3VZEA 2JZ4A 4QX3A 1DLCA 1J4UA 2GTYA 1UGYA 3EB7A 3APAA 1UGYC 5J4TA 2GUCA 1C3MA 3AQGA 4GX7A 3LL2A 4PITA 3VZFA 1TP8A 2BMZA 2C9KA 1WS4A 3MIVA 4R6OA 4R6PA 1WS4C 1JI6A 1WS5C 1KU8A 1W99A 3VZGA 2GUDA 2GUEA 5BN6E 1PXDA 3O44A 1KUJA 1VBOA 4WOGA 4D8MA 5JM1A 1JACA 5J50A 1J4TA 1C3KA 4MOAA 4PIFA 1J4SA 1VMOA 2BN0A 4AK4A 4R6QA 3P8SA 1UGXA 1X1VA 4QX0A 3LL1A 2NUOA 4DDNA 3TOWA 1UH0A 3R50A 4R6NA 1TOQA 3LL0A 3WOBA 4PIKA 5J4XA 1XXRA 3R51A 3LM1A 1ZGSA 4PIUA 2HYQA 4QX2A 5AV7A 3LLYA 3LKYA 1UH1A 3MIUA 1UGWA 3MITA 5J51A 4ARYA 1M26A 1UGWC 1C3NA 4ARXA 1XXQA 2HYRA 2BMYA 1OUWA 4R6RA 1XEZA
chains in the Genus database with same CATH topology
3WOCA 3R52A 4AKDA 1VBPA 4AKCA 1ZGRA 3VY6A 4MQ0A 3LLZA 2NU5A 3VY7A 2GUXA 1WS5A 1JOTA 4AKBA 5EXGA 3VZEA 2JZ4A 1J4UA 2GTYA 1UGYA 3APAA 1UGYC 5J4TA 2GUCA 1C3MA 3AQGA 4GX7A 3LL2A 4PITA 3VZFA 1TP8A 2BMZA 1WS4A 3MIVA 4R6OA 4R6PA 1WS4C 1WS5C 1KU8A 3VZGA 2GUDA 2GUEA 5BN6E 1PXDA 3O44A 1KUJA 1VBOA 4WOGA 5JM1A 1JACA 5J50A 1J4TA 1C3KA 4PIFA 1J4SA 2BN0A 4AK4A 4R6QA 3P8SA 1UGXA 1X1VA 3LL1A 2NUOA 4DDNA 1UH0A 3R50A 4R6NA 1TOQA 3LL0A 3WOBA 5J4XA 4PIKA 1XXRA 3R51A 3LM1A 1ZGSA 4PIUA 2HYQA 5AV7A 3LLYA 3LKYA 1UH1A 3MIUA 1UGWA 3MITA 5J51A 1M26A 1UGWC 1C3NA 1XXQA 2HYRA 2BMYA 1OUWA 4R6RA 1XEZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WOC A;  3R52 A;  4AKD A;  1VBP A;  4AKC A;  1ZGR A;  3VY6 A;  4MQ0 A;  3LLZ A;  2NU5 A;  3VY7 A;  2GUX A;  1WS5 A;  1JOT A;  4AKB A;  5EXG A;  3VZE A;  2JZ4 A;  1J4U A;  2GTY A;  1UGY A;  3APA A;  1UGY C;  5J4T A;  2GUC A;  1C3M A;  3AQG A;  4GX7 A;  3LL2 A;  4PIT A;  3VZF A;  1TP8 A;  2BMZ A;  1WS4 A;  3MIV A;  4R6O A;  4R6P A;  1WS4 C;  1WS5 C;  1KU8 A;  3VZG A;  2GUD A;  2GUE A;  5BN6 E;  1PXD A;  3O44 A;  1KUJ A;  1VBO A;  4WOG A;  5JM1 A;  1JAC A;  5J50 A;  1J4T A;  1C3K A;  4PIF A;  1J4S A;  2BN0 A;  4AK4 A;  4R6Q A;  3P8S A;  1UGX A;  1X1V A;  3LL1 A;  2NUO A;  4DDN A;  1UH0 A;  3R50 A;  4R6N A;  1TOQ A;  3LL0 A;  3WOB A;  5J4X A;  4PIK A;  1XXR A;  3R51 A;  3LM1 A;  1ZGS A;  4PIU A;  2HYQ A;  5AV7 A;  3LLY A;  3LKY A;  1UH1 A;  3MIU A;  1UGW A;  3MIT A;  5J51 A;  1M26 A;  1UGW C;  1C3N A;  1XXQ A;  2HYR A;  2BMY A;  1OUW A;  4R6R A;  1XEZ A; 
#chains in the Genus database with same CATH topology
 3WOC A;  3R52 A;  4W8J A;  4AKD A;  1VBP A;  1CIY A;  4QX1 A;  4AKC A;  1ZGR A;  3VY6 A;  4MQ0 A;  2QP2 A;  3LLZ A;  2NU5 A;  1I5P A;  3VY7 A;  2GUX A;  1WS5 A;  1JOT A;  4AKB A;  5EXG A;  3VZE A;  2JZ4 A;  4QX3 A;  1DLC A;  1J4U A;  2GTY A;  1UGY A;  3EB7 A;  3APA A;  1UGY C;  5J4T A;  2GUC A;  1C3M A;  3AQG A;  4GX7 A;  3LL2 A;  4PIT A;  3VZF A;  1TP8 A;  2BMZ A;  2C9K A;  1WS4 A;  3MIV A;  4R6O A;  4R6P A;  1WS4 C;  1JI6 A;  1WS5 C;  1KU8 A;  1W99 A;  3VZG A;  2GUD A;  2GUE A;  5BN6 E;  1PXD A;  3O44 A;  1KUJ A;  1VBO A;  4WOG A;  4D8M A;  5JM1 A;  1JAC A;  5J50 A;  1J4T A;  1C3K A;  4MOA A;  4PIF A;  1J4S A;  1VMO A;  2BN0 A;  4AK4 A;  4R6Q A;  3P8S A;  1UGX A;  1X1V A;  4QX0 A;  3LL1 A;  2NUO A;  4DDN A;  3TOW A;  1UH0 A;  3R50 A;  4R6N A;  1TOQ A;  3LL0 A;  3WOB A;  4PIK A;  5J4X A;  1XXR A;  3R51 A;  3LM1 A;  1ZGS A;  4PIU A;  2HYQ A;  4QX2 A;  5AV7 A;  3LLY A;  3LKY A;  1UH1 A;  3MIU A;  1UGW A;  3MIT A;  5J51 A;  4ARY A;  1M26 A;  1UGW C;  1C3N A;  4ARX A;  1XXQ A;  2HYR A;  2BMY A;  1OUW A;  4R6R A;  1XEZ A; 
#chains in the Genus database with same CATH homology
 3WOC A;  3R52 A;  4AKD A;  1VBP A;  4AKC A;  1ZGR A;  3VY6 A;  4MQ0 A;  3LLZ A;  2NU5 A;  3VY7 A;  2GUX A;  1WS5 A;  1JOT A;  4AKB A;  5EXG A;  3VZE A;  2JZ4 A;  1J4U A;  2GTY A;  1UGY A;  3APA A;  1UGY C;  5J4T A;  2GUC A;  1C3M A;  3AQG A;  4GX7 A;  3LL2 A;  4PIT A;  3VZF A;  1TP8 A;  2BMZ A;  1WS4 A;  3MIV A;  4R6O A;  4R6P A;  1WS4 C;  1WS5 C;  1KU8 A;  3VZG A;  2GUD A;  2GUE A;  5BN6 E;  1PXD A;  3O44 A;  1KUJ A;  1VBO A;  4WOG A;  5JM1 A;  1JAC A;  5J50 A;  1J4T A;  1C3K A;  4PIF A;  1J4S A;  2BN0 A;  4AK4 A;  4R6Q A;  3P8S A;  1UGX A;  1X1V A;  3LL1 A;  2NUO A;  4DDN A;  1UH0 A;  3R50 A;  4R6N A;  1TOQ A;  3LL0 A;  3WOB A;  5J4X A;  4PIK A;  1XXR A;  3R51 A;  3LM1 A;  1ZGS A;  4PIU A;  2HYQ A;  5AV7 A;  3LLY A;  3LKY A;  1UH1 A;  3MIU A;  1UGW A;  3MIT A;  5J51 A;  1M26 A;  1UGW C;  1C3N A;  1XXQ A;  2HYR A;  2BMY A;  1OUW A;  4R6R A;  1XEZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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