4PITA

Crystal structure of banana lectin h84t bound to dimannose
Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
140
structure length
140
Chain Sequence
AIKVGAWGGNGGSAFDMGPAYRIISVKIFSGDVVDGVDVTFTYYGKTETRHYGGSGGTPHEIVLQEGEYLVGMAGEVANYTGAVVLGKLGFSTNKKAYGPFGNTGGTPFSLPIAAGKISGFFGRGGKFLDAIGVYLEPLE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (16-22)S1 (5-11)S12 (132-140)TIV6 (128-131)S11 (120-128)TVIII3 (116-119)S6 (61-66)S4 (37-46)TVIII1 (23-26)S3 (25-33)S7 (73-83)S8 (86-96)TIV1 (33-36)S5 (49-56)TIV3 (45-48)TII1 (68-71)S10 (110-115)TIV4 (82-85)TIV5 (96-99)S9 (100-104)Updating...
connected with : NaN
molecule tags Sugar binding protein
source organism Musa acuminata
publication title Engineering a Therapeutic Lectin by Uncoupling Mitogenicity from Antiviral Activity.
pubmed doi rcsb
molecule keywords Ripening-associated protein
total genus 25
structure length 140
sequence length 140
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 4pitA00
1PXDA 4PIFA 2GUDA 2NUOA 3VZFA 3MIUA 3LKYA 1X1VA 1J4TA 3VZEA 1M26A 1C3MA 4PIUA 1XEZA 4MQ0A 1WS4A 1J4UA 4GX7A 3R50A 3LM1A 2BN0A 1TP8A 1XXRA 3AQGA 3WOCA 1WS5A 1J4SA 1UGXA 3VY7A 2BMYA 5J4TA 1KUJA 3VZGA 4WOGA 2GTYA 3LLYA 3MITA 1WS4C 1ZGSA 3APAA 2HYQA 3LL1A 3LL2A 4R6NA 1UH0A 4R6PA 4AK4A 1VBOA 5BN6E 1WS5C 3O44A 4PITA 3R52A 1TOQA 2HYRA 5J4XA 2GUXA 1UH1A 1XXQA 4DDNA 1UGWA 1C3NA 2GUEA 1C3KA 5EXGA 3LLZA 4PIKA 5AV7A 1JOTA 3MIVA 4R6QA 1ZGRA 1UGYA 1JACA 1OUWA 1VBPA 2BMZA 1UGWC 3WOBA 5J50A 3VY6A 4AKCA 2GUCA 1KU8A 2NU5A 3LL0A 4R6RA 4AKDA 3P8SA 2JZ4A 5J51A 5JM1A 3R51A 1UGYC 4AKBA 4R6OA
chains in the Genus database with same CATH superfamily
1PXDA 4PIFA 4D8MA 2GUDA 2NUOA 3VZFA 3MIUA 3LKYA 1X1VA 1J4TA 3VZEA 1M26A 1C3MA 4MOAA 4PIUA 1XEZA 4MQ0A 1WS4A 1J4UA 4GX7A 2QP2A 3R50A 3LM1A 2BN0A 1JI6A 1TP8A 1XXRA 3AQGA 3WOCA 1WS5A 1J4SA 1UGXA 3VY7A 2BMYA 1W99A 5J4TA 1KUJA 3VZGA 4WOGA 1CIYA 2GTYA 3LLYA 3MITA 1I5PA 1WS4C 1DLCA 1ZGSA 3APAA 4ARXA 2HYQA 3LL1A 3LL2A 4R6NA 1UH0A 4R6PA 4AK4A 1VBOA 5BN6E 1WS5C 3O44A 4PITA 4QX2A 4QX1A 3R52A 1TOQA 2C9KA 2HYRA 5J4XA 2GUXA 1UH1A 1XXQA 4DDNA 1UGWA 1C3NA 4QX3A 2GUEA 3TOWA 4ARYA 1C3KA 5EXGA 3LLZA 4PIKA 5AV7A 1JOTA 3MIVA 4R6QA 1ZGRA 1UGYA 1JACA 1OUWA 1VBPA 2BMZA 1UGWC 3WOBA 5J50A 3VY6A 4AKCA 2GUCA 1VMOA 1KU8A 2NU5A 3LL0A 3EB7A 4R6RA 4AKDA 3P8SA 4W8JA 2JZ4A 5J51A 5JM1A 3R51A 1UGYC 4AKBA 4QX0A 4R6OA
chains in the Genus database with same CATH topology
1PXDA 4PIFA 2GUDA 2NUOA 3VZFA 3MIUA 3LKYA 1X1VA 1J4TA 3VZEA 1M26A 1C3MA 4PIUA 1XEZA 4MQ0A 1WS4A 1J4UA 4GX7A 3R50A 3LM1A 2BN0A 1TP8A 1XXRA 3AQGA 3WOCA 1WS5A 1J4SA 1UGXA 3VY7A 2BMYA 5J4TA 1KUJA 3VZGA 4WOGA 2GTYA 3LLYA 3MITA 1WS4C 1ZGSA 3APAA 2HYQA 3LL1A 3LL2A 4R6NA 1UH0A 4R6PA 4AK4A 1VBOA 5BN6E 1WS5C 3O44A 4PITA 3R52A 1TOQA 2HYRA 5J4XA 2GUXA 1UH1A 1XXQA 4DDNA 1UGWA 1C3NA 2GUEA 1C3KA 5EXGA 3LLZA 4PIKA 5AV7A 1JOTA 3MIVA 4R6QA 1ZGRA 1UGYA 1JACA 1OUWA 1VBPA 2BMZA 1UGWC 3WOBA 5J50A 3VY6A 4AKCA 2GUCA 1KU8A 2NU5A 3LL0A 4R6RA 4AKDA 3P8SA 2JZ4A 5J51A 5JM1A 3R51A 1UGYC 4AKBA 4R6OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PXD A;  4PIF A;  2GUD A;  2NUO A;  3VZF A;  3MIU A;  3LKY A;  1X1V A;  1J4T A;  3VZE A;  1M26 A;  1C3M A;  4PIU A;  1XEZ A;  4MQ0 A;  1WS4 A;  1J4U A;  4GX7 A;  3R50 A;  3LM1 A;  2BN0 A;  1TP8 A;  1XXR A;  3AQG A;  3WOC A;  1WS5 A;  1J4S A;  1UGX A;  3VY7 A;  2BMY A;  5J4T A;  1KUJ A;  3VZG A;  4WOG A;  2GTY A;  3LLY A;  3MIT A;  1WS4 C;  1ZGS A;  3APA A;  2HYQ A;  3LL1 A;  3LL2 A;  4R6N A;  1UH0 A;  4R6P A;  4AK4 A;  1VBO A;  5BN6 E;  1WS5 C;  3O44 A;  4PIT A;  3R52 A;  1TOQ A;  2HYR A;  5J4X A;  2GUX A;  1UH1 A;  1XXQ A;  4DDN A;  1UGW A;  1C3N A;  2GUE A;  1C3K A;  5EXG A;  3LLZ A;  4PIK A;  5AV7 A;  1JOT A;  3MIV A;  4R6Q A;  1ZGR A;  1UGY A;  1JAC A;  1OUW A;  1VBP A;  2BMZ A;  1UGW C;  3WOB A;  5J50 A;  3VY6 A;  4AKC A;  2GUC A;  1KU8 A;  2NU5 A;  3LL0 A;  4R6R A;  4AKD A;  3P8S A;  2JZ4 A;  5J51 A;  5JM1 A;  3R51 A;  1UGY C;  4AKB A;  4R6O A; 
#chains in the Genus database with same CATH topology
 1PXD A;  4PIF A;  4D8M A;  2GUD A;  2NUO A;  3VZF A;  3MIU A;  3LKY A;  1X1V A;  1J4T A;  3VZE A;  1M26 A;  1C3M A;  4MOA A;  4PIU A;  1XEZ A;  4MQ0 A;  1WS4 A;  1J4U A;  4GX7 A;  2QP2 A;  3R50 A;  3LM1 A;  2BN0 A;  1JI6 A;  1TP8 A;  1XXR A;  3AQG A;  3WOC A;  1WS5 A;  1J4S A;  1UGX A;  3VY7 A;  2BMY A;  1W99 A;  5J4T A;  1KUJ A;  3VZG A;  4WOG A;  1CIY A;  2GTY A;  3LLY A;  3MIT A;  1I5P A;  1WS4 C;  1DLC A;  1ZGS A;  3APA A;  4ARX A;  2HYQ A;  3LL1 A;  3LL2 A;  4R6N A;  1UH0 A;  4R6P A;  4AK4 A;  1VBO A;  5BN6 E;  1WS5 C;  3O44 A;  4PIT A;  4QX2 A;  4QX1 A;  3R52 A;  1TOQ A;  2C9K A;  2HYR A;  5J4X A;  2GUX A;  1UH1 A;  1XXQ A;  4DDN A;  1UGW A;  1C3N A;  4QX3 A;  2GUE A;  3TOW A;  4ARY A;  1C3K A;  5EXG A;  3LLZ A;  4PIK A;  5AV7 A;  1JOT A;  3MIV A;  4R6Q A;  1ZGR A;  1UGY A;  1JAC A;  1OUW A;  1VBP A;  2BMZ A;  1UGW C;  3WOB A;  5J50 A;  3VY6 A;  4AKC A;  2GUC A;  1VMO A;  1KU8 A;  2NU5 A;  3LL0 A;  3EB7 A;  4R6R A;  4AKD A;  3P8S A;  4W8J A;  2JZ4 A;  5J51 A;  5JM1 A;  3R51 A;  1UGY C;  4AKB A;  4QX0 A;  4R6O A; 
#chains in the Genus database with same CATH homology
 1PXD A;  4PIF A;  2GUD A;  2NUO A;  3VZF A;  3MIU A;  3LKY A;  1X1V A;  1J4T A;  3VZE A;  1M26 A;  1C3M A;  4PIU A;  1XEZ A;  4MQ0 A;  1WS4 A;  1J4U A;  4GX7 A;  3R50 A;  3LM1 A;  2BN0 A;  1TP8 A;  1XXR A;  3AQG A;  3WOC A;  1WS5 A;  1J4S A;  1UGX A;  3VY7 A;  2BMY A;  5J4T A;  1KUJ A;  3VZG A;  4WOG A;  2GTY A;  3LLY A;  3MIT A;  1WS4 C;  1ZGS A;  3APA A;  2HYQ A;  3LL1 A;  3LL2 A;  4R6N A;  1UH0 A;  4R6P A;  4AK4 A;  1VBO A;  5BN6 E;  1WS5 C;  3O44 A;  4PIT A;  3R52 A;  1TOQ A;  2HYR A;  5J4X A;  2GUX A;  1UH1 A;  1XXQ A;  4DDN A;  1UGW A;  1C3N A;  2GUE A;  1C3K A;  5EXG A;  3LLZ A;  4PIK A;  5AV7 A;  1JOT A;  3MIV A;  4R6Q A;  1ZGR A;  1UGY A;  1JAC A;  1OUW A;  1VBP A;  2BMZ A;  1UGW C;  3WOB A;  5J50 A;  3VY6 A;  4AKC A;  2GUC A;  1KU8 A;  2NU5 A;  3LL0 A;  4R6R A;  4AKD A;  3P8S A;  2JZ4 A;  5J51 A;  5JM1 A;  3R51 A;  1UGY C;  4AKB A;  4R6O A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.