4WOGA

Crystal structure of frutalin from artocarpus incisa
Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
155
structure length
150
Chain Sequence
QSGKSQTVIVGPWGAQVGKAFDDGAFTGIREINLSYNKETAIGDFQVIYDLNGSPFVGQNHTSFITGFTPVKISLDFPSEYIIEVSGHTGKVSGYVVVRSLAFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
2040608010012014014012010080604020
051015202530Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS12 (148-156)S1 (10-16)TIV5 (144-147)S11 (136-144)S5 (61-68)S10 (126-131)S2 (26-29)TI1 (44-47)S3 (35-43)S4 (49-58)TVIII2 (132-135)S9 (116-121)TIV3 (84-87)S7 (89-99)TVIII1 (85-88)TIV4 (98-101)TI2 (112-115)TIV1 (45-48)S6 (76-81)S8 (102-112)TVIa1 (83-86)Updating...
connected with : NaN
molecule tags Sugar binding protein
publication title Crystal Structure of Frutalin from Artocarpus incisa
rcsb
molecule keywords Frutalin
total genus 31
structure length 150
sequence length 155
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 4wogA00
3LL2A 4R6OA 1C3MA 1J4UA 4DDNA 1J4SA 1KU8A 5J50A 1UGYC 4AKCA 1UGYA 1WS4C 2NU5A 5AV7A 1WS4A 2BMZA 3LM1A 3WOBA 1VBOA 3LKYA 1KUJA 1WS5A 2GUEA 3VZGA 2NUOA 1XXQA 1J4TA 1XXRA 4R6PA 3LLYA 3MITA 3APAA 5BN6E 2GUCA 5EXGA 1PXDA 3VZEA 3WOCA 5J51A 1UH1A 1VBPA 5J4TA 1UGXA 4AK4A 4MQ0A 3AQGA 2GUXA 3R50A 3P8SA 2JZ4A 3LL0A 1M26A 1OUWA 3MIVA 4PIKA 4PITA 3R51A 4AKBA 3MIUA 2BN0A 4PIUA 1C3NA 3VZFA 1TOQA 2GUDA 1UH0A 2GTYA 4AKDA 4PIFA 4WOGA 3VY6A 1JACA 3R52A 5JM1A 2HYRA 3O44A 4R6QA 1UGWC 1JOTA 1UGWA 3VY7A 3LL1A 1TP8A 3LLZA 1XEZA 1C3KA 1WS5C 1X1VA 2BMYA 4GX7A 5J4XA 4R6RA 1ZGSA 4R6NA 2HYQA 1ZGRA
chains in the Genus database with same CATH superfamily
3LL2A 4R6OA 1C3MA 3TOWA 1J4UA 4DDNA 1J4SA 1KU8A 4QX0A 5J50A 4AKCA 4D8MA 1UGYA 1UGYC 1WS4C 2NU5A 5AV7A 1WS4A 2BMZA 4QX2A 3LM1A 3WOBA 1VBOA 3LKYA 1KUJA 1WS5A 1W99A 2GUEA 3VZGA 2NUOA 1XXQA 1J4TA 1XXRA 4R6PA 4ARYA 3LLYA 3MITA 3APAA 5BN6E 2GUCA 5EXGA 1PXDA 3VZEA 4QX3A 3WOCA 5J51A 4QX1A 1UH1A 1VBPA 5J4TA 1UGXA 4ARXA 4AK4A 4MQ0A 3AQGA 2GUXA 3R50A 3P8SA 2JZ4A 3LL0A 1M26A 1I5PA 1OUWA 3MIVA 4PIKA 4PITA 3R51A 4AKBA 3MIUA 2BN0A 4PIUA 1C3NA 3VZFA 1TOQA 1VMOA 1JI6A 2GUDA 1UH0A 4W8JA 2GTYA 4AKDA 4PIFA 4WOGA 3VY6A 1JACA 3R52A 5JM1A 2HYRA 2QP2A 3EB7A 3O44A 4MOAA 4R6QA 1UGWC 1JOTA 1UGWA 3VY7A 1CIYA 3LL1A 1TP8A 3LLZA 1XEZA 1C3KA 1DLCA 2C9KA 1WS5C 1X1VA 2BMYA 4GX7A 5J4XA 4R6RA 1ZGSA 4R6NA 2HYQA 1ZGRA
chains in the Genus database with same CATH topology
3LL2A 4R6OA 1C3MA 1J4UA 4DDNA 1J4SA 1KU8A 5J50A 1UGYC 4AKCA 1UGYA 1WS4C 2NU5A 5AV7A 1WS4A 2BMZA 3LM1A 3WOBA 1VBOA 3LKYA 1KUJA 1WS5A 2GUEA 3VZGA 2NUOA 1XXQA 1J4TA 1XXRA 4R6PA 3LLYA 3MITA 3APAA 5BN6E 2GUCA 5EXGA 1PXDA 3VZEA 3WOCA 5J51A 1UH1A 1VBPA 5J4TA 1UGXA 4AK4A 4MQ0A 3AQGA 2GUXA 3R50A 3P8SA 2JZ4A 3LL0A 1M26A 1OUWA 3MIVA 4PIKA 4PITA 3R51A 4AKBA 3MIUA 2BN0A 4PIUA 1C3NA 3VZFA 1TOQA 2GUDA 1UH0A 2GTYA 4AKDA 4PIFA 4WOGA 3VY6A 1JACA 3R52A 5JM1A 2HYRA 3O44A 4R6QA 1UGWC 1JOTA 1UGWA 3VY7A 3LL1A 1TP8A 3LLZA 1XEZA 1C3KA 1WS5C 1X1VA 2BMYA 4GX7A 5J4XA 4R6RA 1ZGSA 4R6NA 2HYQA 1ZGRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LL2 A;  4R6O A;  1C3M A;  1J4U A;  4DDN A;  1J4S A;  1KU8 A;  5J50 A;  1UGY C;  4AKC A;  1UGY A;  1WS4 C;  2NU5 A;  5AV7 A;  1WS4 A;  2BMZ A;  3LM1 A;  3WOB A;  1VBO A;  3LKY A;  1KUJ A;  1WS5 A;  2GUE A;  3VZG A;  2NUO A;  1XXQ A;  1J4T A;  1XXR A;  4R6P A;  3LLY A;  3MIT A;  3APA A;  5BN6 E;  2GUC A;  5EXG A;  1PXD A;  3VZE A;  3WOC A;  5J51 A;  1UH1 A;  1VBP A;  5J4T A;  1UGX A;  4AK4 A;  4MQ0 A;  3AQG A;  2GUX A;  3R50 A;  3P8S A;  2JZ4 A;  3LL0 A;  1M26 A;  1OUW A;  3MIV A;  4PIK A;  4PIT A;  3R51 A;  4AKB A;  3MIU A;  2BN0 A;  4PIU A;  1C3N A;  3VZF A;  1TOQ A;  2GUD A;  1UH0 A;  2GTY A;  4AKD A;  4PIF A;  4WOG A;  3VY6 A;  1JAC A;  3R52 A;  5JM1 A;  2HYR A;  3O44 A;  4R6Q A;  1UGW C;  1JOT A;  1UGW A;  3VY7 A;  3LL1 A;  1TP8 A;  3LLZ A;  1XEZ A;  1C3K A;  1WS5 C;  1X1V A;  2BMY A;  4GX7 A;  5J4X A;  4R6R A;  1ZGS A;  4R6N A;  2HYQ A;  1ZGR A; 
#chains in the Genus database with same CATH topology
 3LL2 A;  4R6O A;  1C3M A;  3TOW A;  1J4U A;  4DDN A;  1J4S A;  1KU8 A;  4QX0 A;  5J50 A;  4AKC A;  4D8M A;  1UGY A;  1UGY C;  1WS4 C;  2NU5 A;  5AV7 A;  1WS4 A;  2BMZ A;  4QX2 A;  3LM1 A;  3WOB A;  1VBO A;  3LKY A;  1KUJ A;  1WS5 A;  1W99 A;  2GUE A;  3VZG A;  2NUO A;  1XXQ A;  1J4T A;  1XXR A;  4R6P A;  4ARY A;  3LLY A;  3MIT A;  3APA A;  5BN6 E;  2GUC A;  5EXG A;  1PXD A;  3VZE A;  4QX3 A;  3WOC A;  5J51 A;  4QX1 A;  1UH1 A;  1VBP A;  5J4T A;  1UGX A;  4ARX A;  4AK4 A;  4MQ0 A;  3AQG A;  2GUX A;  3R50 A;  3P8S A;  2JZ4 A;  3LL0 A;  1M26 A;  1I5P A;  1OUW A;  3MIV A;  4PIK A;  4PIT A;  3R51 A;  4AKB A;  3MIU A;  2BN0 A;  4PIU A;  1C3N A;  3VZF A;  1TOQ A;  1VMO A;  1JI6 A;  2GUD A;  1UH0 A;  4W8J A;  2GTY A;  4AKD A;  4PIF A;  4WOG A;  3VY6 A;  1JAC A;  3R52 A;  5JM1 A;  2HYR A;  2QP2 A;  3EB7 A;  3O44 A;  4MOA A;  4R6Q A;  1UGW C;  1JOT A;  1UGW A;  3VY7 A;  1CIY A;  3LL1 A;  1TP8 A;  3LLZ A;  1XEZ A;  1C3K A;  1DLC A;  2C9K A;  1WS5 C;  1X1V A;  2BMY A;  4GX7 A;  5J4X A;  4R6R A;  1ZGS A;  4R6N A;  2HYQ A;  1ZGR A; 
#chains in the Genus database with same CATH homology
 3LL2 A;  4R6O A;  1C3M A;  1J4U A;  4DDN A;  1J4S A;  1KU8 A;  5J50 A;  1UGY C;  4AKC A;  1UGY A;  1WS4 C;  2NU5 A;  5AV7 A;  1WS4 A;  2BMZ A;  3LM1 A;  3WOB A;  1VBO A;  3LKY A;  1KUJ A;  1WS5 A;  2GUE A;  3VZG A;  2NUO A;  1XXQ A;  1J4T A;  1XXR A;  4R6P A;  3LLY A;  3MIT A;  3APA A;  5BN6 E;  2GUC A;  5EXG A;  1PXD A;  3VZE A;  3WOC A;  5J51 A;  1UH1 A;  1VBP A;  5J4T A;  1UGX A;  4AK4 A;  4MQ0 A;  3AQG A;  2GUX A;  3R50 A;  3P8S A;  2JZ4 A;  3LL0 A;  1M26 A;  1OUW A;  3MIV A;  4PIK A;  4PIT A;  3R51 A;  4AKB A;  3MIU A;  2BN0 A;  4PIU A;  1C3N A;  3VZF A;  1TOQ A;  2GUD A;  1UH0 A;  2GTY A;  4AKD A;  4PIF A;  4WOG A;  3VY6 A;  1JAC A;  3R52 A;  5JM1 A;  2HYR A;  3O44 A;  4R6Q A;  1UGW C;  1JOT A;  1UGW A;  3VY7 A;  3LL1 A;  1TP8 A;  3LLZ A;  1XEZ A;  1C3K A;  1WS5 C;  1X1V A;  2BMY A;  4GX7 A;  5J4X A;  4R6R A;  1ZGS A;  4R6N A;  2HYQ A;  1ZGR A; 
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