5ACH | Genus

Total Genus 63

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	63
sequence length	234
structure length	234
Chain Sequence	TLVWGVWVNGVDQGDGRNIYIRSPPNNNPVKNLTSPDMTCNVDNRVVPKSVPVNAGDTLTFEWYHNTRDDDIIASSHHGPIAVYIAPAASNGQGNVWVKLFEDAYNVTNSTWAVDRLITAHGQHSVVVPHVAPGDYLFRAEIIALHEADSLYSQNPIRGAQFYISCAQITINSSDDSTPLPAGVPFPGAYTDSTPGIQFNIYTTPATSYVAPPPSVWSGALGGSIAQVGDASLE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Lentinus similis
publication title	The molecular basis of polysaccharide cleavage by lytic polysaccharide monooxygenases. pubmed doi rcsb
molecule keywords	LYTIC POLYSACCHARIDE MONOOXYGENASE
total genus	63
structure length	234
sequence length	234
ec nomenclature
pdb deposition date	2015-08-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03443	Glyco_hydro_61	Glycosyl hydrolase family 61

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.50.70	Mainly Beta	Distorted Sandwich	Coagulation Factor XIII; Chain A, domain 1	Coagulation Factor XIII; Chain A, domain 1	5achA00

2YETA 4EISB 5ACHA 3EJAA 4MAHA 4B5QA 4MAIA 4QI8A 4FMRA 5ACFA 3EIIA 2VTCA 3ZUDA 5ACJA 5ACGA 4D7UA 4EISA 5ACIA 4EIRA 4D7VA 5FOHA
chains in the Genus database with same CATH superfamily

2BEMA 2YETA 5HGUA 3GQQA 3EJAA 4MAHA 3T5GB 4ALTA 2XWXA 4ALSA 1FT0A 5EMVA 5E8FA 5ACGA 5F2UA 2JHZA 1FT3A 1AJWA 4D7UA 5E80A 5FTZA 1KSHB 4D7VA 4OY7A 1HH4D 2JHXA 4ALCA 4JHPB 4QI8A 1KSGB 1RHOA 3JUAA 4JV6B 5DQEA 1KMTA 1FSOA 1QVYA 4JVFB 4LN0A 4OY8A 2JHSA 4RE1A 5DQ8A 5ACIA 5AA7A 3UAMA 2BXWA 1DOAB 4GBOA 5HNPA 4ALRA 2JHYA 5IJUA 1DS6B 5EMWA 4MAIA 3RBQA 4ALQA 2JI0A 5ACFA 5TB5B 2BENA 2VTCA 2YOXA 1FSTA 5ACJA 4JVBB 2YOWA 3T5IA 4EISA 4EIRA 2R5OA 5FOHA 5FJQA 1KSJB 3KYSA 4F38B 4EISB 5ACHA 2JHTA 4B5QA 4GOKC 2LHSA 4FMRA 5L7KA 4JV8B 3EIIA 5HNOA 2JHVA 3L15A 1GDFA 3ZUDA 2JHWA 2YOYA 4GOJC 2JHUA 4A02A 4ALEA 4OY6A 5TARB
chains in the Genus database with same CATH topology

2YETA 5HGUA 4EISB 5ACHA 3EJAA 4MAHA 5EMWA 4MAIA 4QI8A 4B5QA 4FMRA 5ACFA 3EIIA 3JUAA 5EMVA 2VTCA 5DQEA 3L15A 3ZUDA 5ACJA 5ACGA 4LN0A 4D7UA 4RE1A 5DQ8A 4EISA 5ACIA 4EIRA 4D7VA 5FOHA 3KYSA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2YET A;  4EIS B;  5ACH A;  3EJA A;  4MAH A;  4B5Q A;  4MAI A;  4QI8 A;  4FMR A;  5ACF A;  3EII A;  2VTC A;  3ZUD A;  5ACJ A;  5ACG A;  4D7U A;  4EIS A;  5ACI A;  4EIR A;  4D7V A;  5FOH A; 
#chains in the Genus database with same CATH topology
 2BEM A;  2YET A;  5HGU A;  3GQQ A;  3EJA A;  4MAH A;  3T5G B;  4ALT A;  2XWX A;  4ALS A;  1FT0 A;  5EMV A;  5E8F A;  5ACG A;  5F2U A;  2JHZ A;  1FT3 A;  1AJW A;  4D7U A;  5E80 A;  5FTZ A;  1KSH B;  4D7V A;  4OY7 A;  1HH4 D;  2JHX A;  4ALC A;  4JHP B;  4QI8 A;  1KSG B;  1RHO A;  3JUA A;  4JV6 B;  5DQE A;  1KMT A;  1FSO A;  1QVY A;  4JVF B;  4LN0 A;  4OY8 A;  2JHS A;  4RE1 A;  5DQ8 A;  5ACI A;  5AA7 A;  3UAM A;  2BXW A;  1DOA B;  4GBO A;  5HNP A;  4ALR A;  2JHY A;  5IJU A;  1DS6 B;  5EMW A;  4MAI A;  3RBQ A;  4ALQ A;  2JI0 A;  5ACF A;  5TB5 B;  2BEN A;  2VTC A;  2YOX A;  1FST A;  5ACJ A;  4JVB B;  2YOW A;  3T5I A;  4EIS A;  4EIR A;  2R5O A;  5FOH A;  5FJQ A;  1KSJ B;  3KYS A;  4F38 B;  4EIS B;  5ACH A;  2JHT A;  4B5Q A;  4GOK C;  2LHS A;  4FMR A;  5L7K A;  4JV8 B;  3EII A;  5HNO A;  2JHV A;  3L15 A;  1GDF A;  3ZUD A;  2JHW A;  2YOY A;  4GOJ C;  2JHU A;  4A02 A;  4ALE A;  4OY6 A;  5TAR B; 
#chains in the Genus database with same CATH homology
 2YET A;  5HGU A;  4EIS B;  5ACH A;  3EJA A;  4MAH A;  5EMW A;  4MAI A;  4QI8 A;  4B5Q A;  4FMR A;  5ACF A;  3EII A;  3JUA A;  5EMV A;  2VTC A;  5DQE A;  3L15 A;  3ZUD A;  5ACJ A;  5ACG A;  4LN0 A;  4D7U A;  4RE1 A;  5DQ8 A;  4EIS A;  5ACI A;  4EIR A;  4D7V A;  5FOH A;  3KYS A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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5ACHA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations