5D2F | Genus

Total Genus 90

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	90
sequence length	263
structure length	263
Chain Sequence	NRTLTREQVLALAEHIENAELNVHDIGKVTNDFPEMTFADAYDVQWEIRRRKEARGNKIVGLKMGLTSWAKMAQMGVETPIYGFLADYFSVPDGGVVDCSKLIHPKIEAEISVVTKAPLHGPGCHLGDVIAAIDYVIPTVEVIDSRYENFKFDPISVVADNASSTRFITGGRMASLEEVDLRTLGVVMEKNGEVVELGAGAAVLGHPLSSVAMLANLLAERGEHIPAGTFIMTGGITAAVPVAPGDNITVRYQGLGSVSARFI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 263 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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263 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Pseudomonas putida
publication title	Crystal Structures of Apo and Liganded 4-Oxalocrotonate Decarboxylase Uncover a Structural Basis for the Metal-Assisted Decarboxylation of a Vinylogous beta-Keto Acid. pubmed doi rcsb
molecule keywords	4-oxalocrotonate decarboxylase NahK
total genus	90
structure length	263
sequence length	263
ec nomenclature	ec 4.1.1.77: 2-oxo-3-hexenedioate decarboxylase.
pdb deposition date	2015-08-05

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase; domain 2	Fumarylacetoacetase-like, C-terminal domain	5d2fA00

1I7OA 4PFZA 3RR6A 4QKUA 1QCNA 4DBHA 3QDFA 2Q1AX 1QCOA 2Q1DX 3LZKA 2Q18X 2Q19X 5D2HA 3S52A 3V77A 1QQJA 5D2FA 2WQTA 5D2IA 1HYOA 5D2GA 1NR9A 4MAQA 5D2KA 4DBFA 1NKQA 1SV6A 2EB4A 1GTTA 3R6OA 1WZOA 2HZYA 2Q1CX 2EB6A 2DFUA 1SAWA 2EB5A 5D2JA 3BQBA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1I7O A;  4PFZ A;  3RR6 A;  4QKU A;  1QCN A;  4DBH A;  3QDF A;  2Q1A X;  1QCO A;  2Q1D X;  3LZK A;  2Q18 X;  2Q19 X;  5D2H A;  3S52 A;  3V77 A;  1QQJ A;  5D2F A;  2WQT A;  5D2I A;  1HYO A;  5D2G A;  1NR9 A;  4MAQ A;  5D2K A;  4DBF A;  1NKQ A;  1SV6 A;  2EB4 A;  1GTT A;  3R6O A;  1WZO A;  2HZY A;  2Q1C X;  2EB6 A;  2DFU A;  1SAW A;  2EB5 A;  5D2J A;  3BQB A; 
#chains in the Genus database with same CATH topology
 1I7O A;  4PFZ A;  3RR6 A;  4QKU A;  1QCN A;  4DBH A;  3QDF A;  2Q1A X;  1QCO A;  2Q1D X;  3LZK A;  2Q18 X;  2Q19 X;  5D2H A;  3S52 A;  3V77 A;  1QQJ A;  5D2F A;  2WQT A;  5D2I A;  1HYO A;  5D2G A;  1NR9 A;  4MAQ A;  5D2K A;  4DBF A;  1NKQ A;  1SV6 A;  2EB4 A;  1GTT A;  3R6O A;  1WZO A;  2HZY A;  2Q1C X;  2EB6 A;  2DFU A;  1SAW A;  2EB5 A;  5D2J A;  3BQB A; 
#chains in the Genus database with same CATH homology
 1I7O A;  4PFZ A;  3RR6 A;  4QKU A;  1QCN A;  4DBH A;  3QDF A;  2Q1A X;  1QCO A;  2Q1D X;  3LZK A;  2Q18 X;  2Q19 X;  5D2H A;  3S52 A;  3V77 A;  1QQJ A;  5D2F A;  2WQT A;  5D2I A;  1HYO A;  5D2G A;  1NR9 A;  4MAQ A;  5D2K A;  4DBF A;  1NKQ A;  1SV6 A;  2EB4 A;  1GTT A;  3R6O A;  1WZO A;  2HZY A;  2Q1C X;  2EB6 A;  2DFU A;  1SAW A;  2EB5 A;  5D2J A;  3BQB A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5D2FA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN