5D2H | Genus

Total Genus 88

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	88
sequence length	263
structure length	263
Chain Sequence	NRTLTREQVLALAEHIENAELNVHDIGKVTNDFPEMTFADAYDVQWEIRRRKEARGNKIVGLKMGLTSWAKMAQMGVETPIYGFLADYFSVPDGGVVDCSKLIHPKIEAEISVVTKAPLHGPGCHLGDVIAAIDYVIPTVEVIDSRYENFKFDPISVVADNASSTRFITGGRMASLEEVDLRTLGVVMEKNGEVVELGAGAAVLGHPLSSVAMLANLLAERGEHIPAGTFIMTGGITAAVPVAPGDNITVRYQGLGSVSARFI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal Structures of Apo and Liganded 4-Oxalocrotonate Decarboxylase Uncover a Structural Basis for the Metal-Assisted Decarboxylation of a Vinylogous beta-Keto Acid. pubmed doi rcsb
molecule keywords	4-oxalocrotonate decarboxylase NahK
molecule tags	Lyase
source organism	Pseudomonas putida
total genus	88
structure length	263
sequence length	263
ec nomenclature	ec 4.1.1.77: 2-oxo-3-hexenedioate decarboxylase.
pdb deposition date	2015-08-05

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase; domain 2	Fumarylacetoacetase-like, C-terminal domain	5d2hA00

3BQBA 4PFZA 5D2FA 1NR9A 1WZOA 1SAWA 1I7OA 1QCNA 2HZYA 1QCOA 3LZKA 3QDFA 4QKUA 4MAQA 2WQTA 3S52A 2Q1AX 1HYOA 5D2IA 1SV6A 2EB6A 2Q1DX 1NKQA 4DBHA 5D2JA 5D2GA 2Q19X 2Q1CX 5D2HA 2Q18X 3V77A 2DFUA 1GTTA 4DBFA 3R6OA 2EB4A 3RR6A 5D2KA 1QQJA 2EB5A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3BQB A;  4PFZ A;  5D2F A;  1NR9 A;  1WZO A;  1SAW A;  1I7O A;  1QCN A;  2HZY A;  1QCO A;  3LZK A;  3QDF A;  4QKU A;  4MAQ A;  2WQT A;  3S52 A;  2Q1A X;  1HYO A;  5D2I A;  1SV6 A;  2EB6 A;  2Q1D X;  1NKQ A;  4DBH A;  5D2J A;  5D2G A;  2Q19 X;  2Q1C X;  5D2H A;  2Q18 X;  3V77 A;  2DFU A;  1GTT A;  4DBF A;  3R6O A;  2EB4 A;  3RR6 A;  5D2K A;  1QQJ A;  2EB5 A; 
#chains in the Genus database with same CATH topology
 3BQB A;  4PFZ A;  5D2F A;  1NR9 A;  1WZO A;  1SAW A;  1I7O A;  1QCN A;  2HZY A;  1QCO A;  3LZK A;  3QDF A;  4QKU A;  4MAQ A;  2WQT A;  3S52 A;  2Q1A X;  1HYO A;  5D2I A;  1SV6 A;  2EB6 A;  2Q1D X;  1NKQ A;  4DBH A;  5D2J A;  5D2G A;  2Q19 X;  2Q1C X;  5D2H A;  2Q18 X;  3V77 A;  2DFU A;  1GTT A;  4DBF A;  3R6O A;  2EB4 A;  3RR6 A;  5D2K A;  1QQJ A;  2EB5 A; 
#chains in the Genus database with same CATH homology
 3BQB A;  4PFZ A;  5D2F A;  1NR9 A;  1WZO A;  1SAW A;  1I7O A;  1QCN A;  2HZY A;  1QCO A;  3LZK A;  3QDF A;  4QKU A;  4MAQ A;  2WQT A;  3S52 A;  2Q1A X;  1HYO A;  5D2I A;  1SV6 A;  2EB6 A;  2Q1D X;  1NKQ A;  4DBH A;  5D2J A;  5D2G A;  2Q19 X;  2Q1C X;  5D2H A;  2Q18 X;  3V77 A;  2DFU A;  1GTT A;  4DBF A;  3R6O A;  2EB4 A;  3RR6 A;  5D2K A;  1QQJ A;  2EB5 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5D2HA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN