5D2H | Genus

Total Genus 88

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	88
sequence length	263
structure length	263
Chain Sequence	NRTLTREQVLALAEHIENAELNVHDIGKVTNDFPEMTFADAYDVQWEIRRRKEARGNKIVGLKMGLTSWAKMAQMGVETPIYGFLADYFSVPDGGVVDCSKLIHPKIEAEISVVTKAPLHGPGCHLGDVIAAIDYVIPTVEVIDSRYENFKFDPISVVADNASSTRFITGGRMASLEEVDLRTLGVVMEKNGEVVELGAGAAVLGHPLSSVAMLANLLAERGEHIPAGTFIMTGGITAAVPVAPGDNITVRYQGLGSVSARFI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 263 atoms

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263 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Pseudomonas putida
publication title	Crystal Structures of Apo and Liganded 4-Oxalocrotonate Decarboxylase Uncover a Structural Basis for the Metal-Assisted Decarboxylation of a Vinylogous beta-Keto Acid. pubmed doi rcsb
molecule keywords	4-oxalocrotonate decarboxylase NahK
total genus	88
structure length	263
sequence length	263
ec nomenclature	ec 4.1.1.77: 2-oxo-3-hexenedioate decarboxylase.
pdb deposition date	2015-08-05

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase; domain 2	Fumarylacetoacetase-like, C-terminal domain	5d2hA00

3QDFA 3RR6A 1HYOA 2HZYA 2Q1CX 1QCNA 5D2GA 4QKUA 1SAWA 5D2FA 2Q1DX 2DFUA 1SV6A 1NR9A 1GTTA 2Q18X 1QQJA 2Q19X 2WQTA 2EB6A 1I7OA 4DBHA 3S52A 1QCOA 2Q1AX 1NKQA 5D2IA 5D2HA 2EB4A 4MAQA 1WZOA 5D2KA 2EB5A 3V77A 3LZKA 3R6OA 3BQBA 4PFZA 4DBFA 5D2JA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3QDF A;  3RR6 A;  1HYO A;  2HZY A;  2Q1C X;  1QCN A;  5D2G A;  4QKU A;  1SAW A;  5D2F A;  2Q1D X;  2DFU A;  1SV6 A;  1NR9 A;  1GTT A;  2Q18 X;  1QQJ A;  2Q19 X;  2WQT A;  2EB6 A;  1I7O A;  4DBH A;  3S52 A;  1QCO A;  2Q1A X;  1NKQ A;  5D2I A;  5D2H A;  2EB4 A;  4MAQ A;  1WZO A;  5D2K A;  2EB5 A;  3V77 A;  3LZK A;  3R6O A;  3BQB A;  4PFZ A;  4DBF A;  5D2J A; 
#chains in the Genus database with same CATH topology
 3QDF A;  3RR6 A;  1HYO A;  2HZY A;  2Q1C X;  1QCN A;  5D2G A;  4QKU A;  1SAW A;  5D2F A;  2Q1D X;  2DFU A;  1SV6 A;  1NR9 A;  1GTT A;  2Q18 X;  1QQJ A;  2Q19 X;  2WQT A;  2EB6 A;  1I7O A;  4DBH A;  3S52 A;  1QCO A;  2Q1A X;  1NKQ A;  5D2I A;  5D2H A;  2EB4 A;  4MAQ A;  1WZO A;  5D2K A;  2EB5 A;  3V77 A;  3LZK A;  3R6O A;  3BQB A;  4PFZ A;  4DBF A;  5D2J A; 
#chains in the Genus database with same CATH homology
 3QDF A;  3RR6 A;  1HYO A;  2HZY A;  2Q1C X;  1QCN A;  5D2G A;  4QKU A;  1SAW A;  5D2F A;  2Q1D X;  2DFU A;  1SV6 A;  1NR9 A;  1GTT A;  2Q18 X;  1QQJ A;  2Q19 X;  2WQT A;  2EB6 A;  1I7O A;  4DBH A;  3S52 A;  1QCO A;  2Q1A X;  1NKQ A;  5D2I A;  5D2H A;  2EB4 A;  4MAQ A;  1WZO A;  5D2K A;  2EB5 A;  3V77 A;  3LZK A;  3R6O A;  3BQB A;  4PFZ A;  4DBF A;  5D2J A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5D2HA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN