5EXG | Genus

Total Genus 26

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	26
sequence length	142
structure length	142
Chain Sequence	MNGAIKVGAWGGNGGSAFDMGPAYRIISVKIFSGDVVDGVDVTFTYYGKTETRHYGGSGGTPHEIVLQEGEYLVGMAGEVANYHGAVVLGKLGFSTNKKAYGPFGNTGGTPFSLPIAAGKISGFFGRGGKFLDAIGVYLEPA

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
source organism	Musa acuminata
publication title	Glycan cluster recognition by a potent anti-HIV lectin exploiting bidentate binding amplified by tetrameric architecture rcsb
molecule keywords	Ripening-associated protein
total genus	26
structure length	142
sequence length	142
chains with identical sequence	B
ec nomenclature
pdb deposition date	2015-11-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	5exgA00

4PIFA 2GUEA 1KU8A 3VZFA 1C3MA 1UGXA 1M26A 2JZ4A 2GUXA 1J4SA 1TP8A 3VZEA 2BMYA 4PITA 4R6RA 3MIVA 3WOCA 2GUCA 1X1VA 4DDNA 1ZGRA 3R52A 5J4XA 1PXDA 5J51A 4AK4A 4PIUA 3LL2A 1VBPA 1C3KA 1UGWC 2HYQA 1WS5A 3MITA 3LLZA 1C3NA 1XEZA 2HYRA 1XXQA 4R6QA 2GUDA 5EXGA 2BN0A 1ZGSA 1WS4C 1UGYC 1VBOA 4AKBA 3R50A 3P8SA 3LM1A 5J4TA 3R51A 1JACA 3LLYA 3VZGA 3VY6A 4GX7A 2NUOA 5AV7A 1XXRA 5JM1A 1OUWA 4MQ0A 1UGWA 3WOBA 4R6OA 4AKDA 1J4TA 5BN6E 1JOTA 3MIUA 1WS4A 2GTYA 3LL1A 1UGYA 5J50A 1KUJA 4PIKA 3APAA 1UH0A 1J4UA 1UH1A 4R6PA 2NU5A 3AQGA 4R6NA 4AKCA 1TOQA 3LL0A 4WOGA 2BMZA 3VY7A 1WS5C 3O44A 3LKYA
chains in the Genus database with same CATH superfamily

4PIFA 2GUEA 1KU8A 3VZFA 1C3MA 1UGXA 4W8JA 1M26A 2JZ4A 2GUXA 1J4SA 1TP8A 4QX1A 4QX0A 3VZEA 2BMYA 1DLCA 4PITA 4R6RA 3MIVA 3WOCA 2GUCA 4QX2A 1X1VA 4DDNA 1ZGRA 3R52A 5J4XA 1PXDA 5J51A 4AK4A 4PIUA 3LL2A 1VBPA 1C3KA 1UGWC 4MOAA 4ARYA 2HYQA 1WS5A 3MITA 3LLZA 1C3NA 1XEZA 2HYRA 1XXQA 4R6QA 1I5PA 2GUDA 5EXGA 2BN0A 2C9KA 1ZGSA 1WS4C 1UGYC 1VBOA 1CIYA 4AKBA 3R50A 3P8SA 3LM1A 5J4TA 3R51A 1JACA 3LLYA 3VZGA 3VY6A 4GX7A 2NUOA 2QP2A 5AV7A 1XXRA 5JM1A 3EB7A 1OUWA 4MQ0A 1UGWA 3WOBA 4R6OA 4AKDA 1J4TA 5BN6E 1W99A 1JOTA 3MIUA 1WS4A 2GTYA 3LL1A 1UGYA 5J50A 1KUJA 1VMOA 4PIKA 3APAA 1UH0A 4QX3A 1J4UA 1UH1A 4R6PA 2NU5A 3AQGA 4R6NA 4AKCA 1TOQA 3TOWA 4D8MA 3LL0A 4WOGA 4ARXA 2BMZA 1JI6A 3VY7A 1WS5C 3O44A 3LKYA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4PIF A;  2GUE A;  1KU8 A;  3VZF A;  1C3M A;  1UGX A;  1M26 A;  2JZ4 A;  2GUX A;  1J4S A;  1TP8 A;  3VZE A;  2BMY A;  4PIT A;  4R6R A;  3MIV A;  3WOC A;  2GUC A;  1X1V A;  4DDN A;  1ZGR A;  3R52 A;  5J4X A;  1PXD A;  5J51 A;  4AK4 A;  4PIU A;  3LL2 A;  1VBP A;  1C3K A;  1UGW C;  2HYQ A;  1WS5 A;  3MIT A;  3LLZ A;  1C3N A;  1XEZ A;  2HYR A;  1XXQ A;  4R6Q A;  2GUD A;  5EXG A;  2BN0 A;  1ZGS A;  1WS4 C;  1UGY C;  1VBO A;  4AKB A;  3R50 A;  3P8S A;  3LM1 A;  5J4T A;  3R51 A;  1JAC A;  3LLY A;  3VZG A;  3VY6 A;  4GX7 A;  2NUO A;  5AV7 A;  1XXR A;  5JM1 A;  1OUW A;  4MQ0 A;  1UGW A;  3WOB A;  4R6O A;  4AKD A;  1J4T A;  5BN6 E;  1JOT A;  3MIU A;  1WS4 A;  2GTY A;  3LL1 A;  1UGY A;  5J50 A;  1KUJ A;  4PIK A;  3APA A;  1UH0 A;  1J4U A;  1UH1 A;  4R6P A;  2NU5 A;  3AQG A;  4R6N A;  4AKC A;  1TOQ A;  3LL0 A;  4WOG A;  2BMZ A;  3VY7 A;  1WS5 C;  3O44 A;  3LKY A; 
#chains in the Genus database with same CATH topology
 4PIF A;  2GUE A;  1KU8 A;  3VZF A;  1C3M A;  1UGX A;  4W8J A;  1M26 A;  2JZ4 A;  2GUX A;  1J4S A;  1TP8 A;  4QX1 A;  4QX0 A;  3VZE A;  2BMY A;  1DLC A;  4PIT A;  4R6R A;  3MIV A;  3WOC A;  2GUC A;  4QX2 A;  1X1V A;  4DDN A;  1ZGR A;  3R52 A;  5J4X A;  1PXD A;  5J51 A;  4AK4 A;  4PIU A;  3LL2 A;  1VBP A;  1C3K A;  1UGW C;  4MOA A;  4ARY A;  2HYQ A;  1WS5 A;  3MIT A;  3LLZ A;  1C3N A;  1XEZ A;  2HYR A;  1XXQ A;  4R6Q A;  1I5P A;  2GUD A;  5EXG A;  2BN0 A;  2C9K A;  1ZGS A;  1WS4 C;  1UGY C;  1VBO A;  1CIY A;  4AKB A;  3R50 A;  3P8S A;  3LM1 A;  5J4T A;  3R51 A;  1JAC A;  3LLY A;  3VZG A;  3VY6 A;  4GX7 A;  2NUO A;  2QP2 A;  5AV7 A;  1XXR A;  5JM1 A;  3EB7 A;  1OUW A;  4MQ0 A;  1UGW A;  3WOB A;  4R6O A;  4AKD A;  1J4T A;  5BN6 E;  1W99 A;  1JOT A;  3MIU A;  1WS4 A;  2GTY A;  3LL1 A;  1UGY A;  5J50 A;  1KUJ A;  1VMO A;  4PIK A;  3APA A;  1UH0 A;  4QX3 A;  1J4U A;  1UH1 A;  4R6P A;  2NU5 A;  3AQG A;  4R6N A;  4AKC A;  1TOQ A;  3TOW A;  4D8M A;  3LL0 A;  4WOG A;  4ARX A;  2BMZ A;  1JI6 A;  3VY7 A;  1WS5 C;  3O44 A;  3LKY A; 
#chains in the Genus database with same CATH homology
 4PIF A;  2GUE A;  1KU8 A;  3VZF A;  1C3M A;  1UGX A;  1M26 A;  2JZ4 A;  2GUX A;  1J4S A;  1TP8 A;  3VZE A;  2BMY A;  4PIT A;  4R6R A;  3MIV A;  3WOC A;  2GUC A;  1X1V A;  4DDN A;  1ZGR A;  3R52 A;  5J4X A;  1PXD A;  5J51 A;  4AK4 A;  4PIU A;  3LL2 A;  1VBP A;  1C3K A;  1UGW C;  2HYQ A;  1WS5 A;  3MIT A;  3LLZ A;  1C3N A;  1XEZ A;  2HYR A;  1XXQ A;  4R6Q A;  2GUD A;  5EXG A;  2BN0 A;  1ZGS A;  1WS4 C;  1UGY C;  1VBO A;  4AKB A;  3R50 A;  3P8S A;  3LM1 A;  5J4T A;  3R51 A;  1JAC A;  3LLY A;  3VZG A;  3VY6 A;  4GX7 A;  2NUO A;  5AV7 A;  1XXR A;  5JM1 A;  1OUW A;  4MQ0 A;  1UGW A;  3WOB A;  4R6O A;  4AKD A;  1J4T A;  5BN6 E;  1JOT A;  3MIU A;  1WS4 A;  2GTY A;  3LL1 A;  1UGY A;  5J50 A;  1KUJ A;  4PIK A;  3APA A;  1UH0 A;  1J4U A;  1UH1 A;  4R6P A;  2NU5 A;  3AQG A;  4R6N A;  4AKC A;  1TOQ A;  3LL0 A;  4WOG A;  2BMZ A;  3VY7 A;  1WS5 C;  3O44 A;  3LKY A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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5EXGA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations