5FJQA

Structural and functional analysis of a lytic polysaccharide monooxygenase important for efficient utilization of chitin in cellvibrio japonicus
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
180
structure length
180
Chain Sequence
HGYVSSPKSRVIQCKENGIENPTHPACIAAKAAGNGGLYTPQEVAVGGVRDNHDYYIPDGRLCSANRANLFGMDLARNDWPATSVTPGAREFVWTNTAAHKTKYFRYYITPQGYDHSQPLRWSDLQLIHDSGPADQEWVSTHNVILPYRTGRHIIYSIWQRDWDRDAAEGFYQCIDVDFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and Functional Analysis of a Lytic Polysaccharide Monooxygenase Important for Efficient Utilization of Chitin in Cellvibrio Japonicus
pubmed doi rcsb
molecule tags Sugar binding protein
source organism Cellvibrio japonicus
molecule keywords CARBOHYDRATE BINDING PROTEIN, PUTATIVE, CPB33A
total genus 57
structure length 180
sequence length 180
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2015-10-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03067 LPMO_10 Lytic polysaccharide mono-oxygenase, cellulose-degrading
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.50.50 Mainly Beta Distorted Sandwich Coagulation Factor XIII; Chain A, domain 1 chitin-binding protein cbp21 5fjqA00
4OY6A 2BEMA 4ALCA 4OY7A 2BENA 5FJQA 2XWXA 2YOYA 4ALRA 4ALTA 2YOWA 2YOXA 4ALSA 5FTZA 4A02A 4ALQA 2LHSA 5IJUA 5AA7A 3UAMA 4ALEA 4GBOA 4OY8A
chains in the Genus database with same CATH superfamily
4MAIA 3EJAA 5L7KA 4F38B 2YOYA 4ALRA 3KYSA 4EISB 4B5QA 5EMWA 1FT0A 1HH4D 1DS6B 5F2UA 5EMVA 2LHSA 4GBOA 2JHTA 2BXWA 3UAMA 2YETA 5ACJA 4D7VA 5E8FA 2JHWA 1GDFA 2JHZA 2JHYA 2JI0A 2YOXA 1FSTA 3GQQA 4JVBB 2VTCA 4JV6B 1DOAB 3JUAA 5IJUA 5AA7A 5FOHA 4ALEA 4OY8A 4OY6A 4ALCA 4GOKC 2R5OA 4EISA 1KMTA 1FT3A 2JHXA 4FMRA 1RHOA 4QI8A 5FJQA 2XWXA 4GOJC 4JHPB 4JVFB 5HGUA 4RE1A 4D7UA 5ACIA 3L15A 5TARB 3RBQA 1KSGB 1KSJB 4MAHA 5TB5B 2JHSA 2BEMA 3EIIA 1AJWA 4OY7A 3T5IA 2BENA 5ACHA 3ZUDA 5HNOA 5DQEA 5ACGA 4ALTA 5HNPA 2YOWA 2JHVA 1QVYA 5ACFA 4EIRA 4ALSA 5FTZA 4A02A 1KSHB 4ALQA 1FSOA 4JV8B 5E80A 2JHUA 5DQ8A 4LN0A 3T5GB
chains in the Genus database with same CATH topology
4OY6A 2BEMA 4ALCA 4OY7A 2BENA 5FJQA 2XWXA 2YOYA 4ALRA 4ALTA 2YOWA 2YOXA 4ALSA 5FTZA 4A02A 4ALQA 2LHSA 5IJUA 5AA7A 3UAMA 4ALEA 4GBOA 4OY8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OY6 A;  2BEM A;  4ALC A;  4OY7 A;  2BEN A;  5FJQ A;  2XWX A;  2YOY A;  4ALR A;  4ALT A;  2YOW A;  2YOX A;  4ALS A;  5FTZ A;  4A02 A;  4ALQ A;  2LHS A;  5IJU A;  5AA7 A;  3UAM A;  4ALE A;  4GBO A;  4OY8 A; 
#chains in the Genus database with same CATH topology
 4MAI A;  3EJA A;  5L7K A;  4F38 B;  2YOY A;  4ALR A;  3KYS A;  4EIS B;  4B5Q A;  5EMW A;  1FT0 A;  1HH4 D;  1DS6 B;  5F2U A;  5EMV A;  2LHS A;  4GBO A;  2JHT A;  2BXW A;  3UAM A;  2YET A;  5ACJ A;  4D7V A;  5E8F A;  2JHW A;  1GDF A;  2JHZ A;  2JHY A;  2JI0 A;  2YOX A;  1FST A;  3GQQ A;  4JVB B;  2VTC A;  4JV6 B;  1DOA B;  3JUA A;  5IJU A;  5AA7 A;  5FOH A;  4ALE A;  4OY8 A;  4OY6 A;  4ALC A;  4GOK C;  2R5O A;  4EIS A;  1KMT A;  1FT3 A;  2JHX A;  4FMR A;  1RHO A;  4QI8 A;  5FJQ A;  2XWX A;  4GOJ C;  4JHP B;  4JVF B;  5HGU A;  4RE1 A;  4D7U A;  5ACI A;  3L15 A;  5TAR B;  3RBQ A;  1KSG B;  1KSJ B;  4MAH A;  5TB5 B;  2JHS A;  2BEM A;  3EII A;  1AJW A;  4OY7 A;  3T5I A;  2BEN A;  5ACH A;  3ZUD A;  5HNO A;  5DQE A;  5ACG A;  4ALT A;  5HNP A;  2YOW A;  2JHV A;  1QVY A;  5ACF A;  4EIR A;  4ALS A;  5FTZ A;  4A02 A;  1KSH B;  4ALQ A;  1FSO A;  4JV8 B;  5E80 A;  2JHU A;  5DQ8 A;  4LN0 A;  3T5G B; 
#chains in the Genus database with same CATH homology
 4OY6 A;  2BEM A;  4ALC A;  4OY7 A;  2BEN A;  5FJQ A;  2XWX A;  2YOY A;  4ALR A;  4ALT A;  2YOW A;  2YOX A;  4ALS A;  5FTZ A;  4A02 A;  4ALQ A;  2LHS A;  5IJU A;  5AA7 A;  3UAM A;  4ALE A;  4GBO A;  4OY8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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