5FJQA

Structural and functional analysis of a lytic polysaccharide monooxygenase important for efficient utilization of chitin in cellvibrio japonicus
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
180
structure length
180
Chain Sequence
HGYVSSPKSRVIQCKENGIENPTHPACIAAKAAGNGGLYTPQEVAVGGVRDNHDYYIPDGRLCSANRANLFGMDLARNDWPATSVTPGAREFVWTNTAAHKTKYFRYYITPQGYDHSQPLRWSDLQLIHDSGPADQEWVSTHNVILPYRTGRHIIYSIWQRDWDRDAAEGFYQCIDVDFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
source organism Cellvibrio japonicus
publication title Structural and Functional Analysis of a Lytic Polysaccharide Monooxygenase Important for Efficient Utilization of Chitin in Cellvibrio Japonicus
pubmed doi rcsb
molecule keywords CARBOHYDRATE BINDING PROTEIN, PUTATIVE, CPB33A
total genus 57
structure length 180
sequence length 180
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2015-10-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03067 LPMO_10 Lytic polysaccharide mono-oxygenase, cellulose-degrading
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.50.50 Mainly Beta Distorted Sandwich Coagulation Factor XIII; Chain A, domain 1 chitin-binding protein cbp21 5fjqA00
2XWXA 2LHSA 4OY7A 4ALRA 4OY6A 4ALTA 4ALEA 3UAMA 5AA7A 4ALQA 2BENA 2BEMA 4ALCA 2YOYA 4ALSA 2YOWA 5FJQA 5IJUA 5FTZA 4OY8A 2YOXA 4A02A 4GBOA
chains in the Genus database with same CATH superfamily
3RBQA 3ZUDA 2YETA 4EIRA 1RHOA 4ALTA 4ALEA 3L15A 3T5GB 2JHXA 2JHYA 5HGUA 4JV8B 2YOWA 1KMTA 1KSGB 5EMVA 5IJUA 4OY8A 1GDFA 1KSHB 1QVYA 2JI0A 5E80A 5TARB 4LN0A 2JHTA 5HNOA 2JHWA 4ALRA 1FSOA 4F38B 4MAHA 4D7VA 4OY6A 5E8FA 5EMWA 4JVBB 4ALQA 1KSJB 2BEMA 5TB5B 2BXWA 5ACGA 4EISA 4MAIA 4GOJC 4D7UA 3GQQA 4B5QA 4EISB 1DOAB 4GBOA 1HH4D 3JUAA 3EIIA 2LHSA 4OY7A 2VTCA 4RE1A 3T5IA 5FOHA 3UAMA 2JHZA 2JHUA 4JV6B 4FMRA 4GOKC 1FT0A 2BENA 4ALCA 2JHVA 3KYSA 1FT3A 5FTZA 2YOXA 4JVFB 5F2UA 4A02A 1DS6B 4QI8A 5ACJA 2XWXA 5DQ8A 5L7KA 3EJAA 5ACIA 2R5OA 5AA7A 1FSTA 4JHPB 2YOYA 5HNPA 4ALSA 5FJQA 1AJWA 2JHSA 5DQEA 5ACFA 5ACHA
chains in the Genus database with same CATH topology
2XWXA 2LHSA 4OY7A 4ALRA 4OY6A 4ALTA 4ALEA 3UAMA 5AA7A 4ALQA 2BENA 2BEMA 4ALCA 2YOYA 4ALSA 2YOWA 5FJQA 5IJUA 5FTZA 4OY8A 2YOXA 4A02A 4GBOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XWX A;  2LHS A;  4OY7 A;  4ALR A;  4OY6 A;  4ALT A;  4ALE A;  3UAM A;  5AA7 A;  4ALQ A;  2BEN A;  2BEM A;  4ALC A;  2YOY A;  4ALS A;  2YOW A;  5FJQ A;  5IJU A;  5FTZ A;  4OY8 A;  2YOX A;  4A02 A;  4GBO A; 
#chains in the Genus database with same CATH topology
 3RBQ A;  3ZUD A;  2YET A;  4EIR A;  1RHO A;  4ALT A;  4ALE A;  3L15 A;  3T5G B;  2JHX A;  2JHY A;  5HGU A;  4JV8 B;  2YOW A;  1KMT A;  1KSG B;  5EMV A;  5IJU A;  4OY8 A;  1GDF A;  1KSH B;  1QVY A;  2JI0 A;  5E80 A;  5TAR B;  4LN0 A;  2JHT A;  5HNO A;  2JHW A;  4ALR A;  1FSO A;  4F38 B;  4MAH A;  4D7V A;  4OY6 A;  5E8F A;  5EMW A;  4JVB B;  4ALQ A;  1KSJ B;  2BEM A;  5TB5 B;  2BXW A;  5ACG A;  4EIS A;  4MAI A;  4GOJ C;  4D7U A;  3GQQ A;  4B5Q A;  4EIS B;  1DOA B;  4GBO A;  1HH4 D;  3JUA A;  3EII A;  2LHS A;  4OY7 A;  2VTC A;  4RE1 A;  3T5I A;  5FOH A;  3UAM A;  2JHZ A;  2JHU A;  4JV6 B;  4FMR A;  4GOK C;  1FT0 A;  2BEN A;  4ALC A;  2JHV A;  3KYS A;  1FT3 A;  5FTZ A;  2YOX A;  4JVF B;  5F2U A;  4A02 A;  1DS6 B;  4QI8 A;  5ACJ A;  2XWX A;  5DQ8 A;  5L7K A;  3EJA A;  5ACI A;  2R5O A;  5AA7 A;  1FST A;  4JHP B;  2YOY A;  5HNP A;  4ALS A;  5FJQ A;  1AJW A;  2JHS A;  5DQE A;  5ACF A;  5ACH A; 
#chains in the Genus database with same CATH homology
 2XWX A;  2LHS A;  4OY7 A;  4ALR A;  4OY6 A;  4ALT A;  4ALE A;  3UAM A;  5AA7 A;  4ALQ A;  2BEN A;  2BEM A;  4ALC A;  2YOY A;  4ALS A;  2YOW A;  5FJQ A;  5IJU A;  5FTZ A;  4OY8 A;  2YOX A;  4A02 A;  4GBO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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