The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
10
|
sequence length |
56
|
structure length |
56
|
Chain Sequence |
EVPKEAYIIQIDLPAVLGPDMKEYGPFMAGDMAIIPTVIGRALVEREAARRVRIFL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Dna binding protein/replication
|
| source organism |
Thermococcus kodakarensis (strain atcc baa-918 / jcm 12380 / kod1)
|
| publication title |
Atomic structure of an archaeal GAN suggests its dual roles as an exonuclease in DNA repair and a CMG component in DNA replication.
pubmed doi rcsb |
| molecule keywords |
SsDNA-specific exonuclease
|
| total genus |
10
|
| structure length |
56
|
| sequence length |
56
|
| chains with identical sequence |
D
|
| ec nomenclature | |
| pdb deposition date | 2016-06-20 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Ribosomal Protein L9; domain 1 | Ribosomal Protein L9; domain 1 |
#chains in the Genus database with same CATH superfamily 5GHS C; 5GHR B; 3ANW A; 2Q9Q A; 2EHO C; 2E9X B; #chains in the Genus database with same CATH topology 3LPQ A; 2R13 A; 4UY8 H; 2E9X D; 3REE A; 2HJQ A; 2QD0 A; 4F28 A; 3EW0 A; 3FND A; 3J7Z H; 4F1E A; 2QH7 A; 1CQU A; 2X4A A; 4FS8 A; 5EG5 A; 3S2R A; 4KW7 A; 2LSM A; 4OO7 A; 3FNV A; 1DIV A; 4EZF A; 2X49 A; 4F2C A; 5GHS C; 2HVF A; 4FSD A; 3ANW A; 3CO4 A; 2Q9Q A; 4RSR A; 2HBB A; 2OUT A; 2EHO C; 2E9X B; 4OOA A; 3S2Q A; 3TBN A; 2HBA A; 5GHR B; 2Q9Q B; 4FR0 A; 3TBO A; #chains in the Genus database with same CATH homology 3LPQ A; 2R13 A; 2E9X D; 3REE A; 2QD0 A; 4F28 A; 3EW0 A; 4F1E A; 2QH7 A; 2X4A A; 4FS8 A; 5EG5 A; 3S2R A; 4KW7 A; 2LSM A; 4OO7 A; 3FNV A; 4EZF A; 4F2C A; 2X49 A; 5GHS C; 4FSD A; 3ANW A; 2Q9Q A; 4RSR A; 2OUT A; 2EHO C; 2E9X B; 4OOA A; 3S2Q A; 3TBN A; 5GHR B; 2Q9Q B; 4FR0 A; 3TBO A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
