5HNPA

The structure of the kdo-capped saccharide binding subunit of the o-12 specific abc transporter, wzt
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
163
structure length
161
Chain Sequence
VSVEELKAIQLRTTNEATGEKRFGSARAIIEDLTIYKSDGTTLAEKPLIKSGEEVTFDFTILASEEIKDIALGISMSKAQGGDIWGDSNIGAGSAITLRPGRQRIVYKATLPINSGDYLIHCGLAKVGDREELDQRRPMMKVKFWSARELGGVIHAPLKII
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The Klebsiella pneumoniae O12 ATP-binding Cassette (ABC) Transporter Recognizes the Terminal Residue of Its O-antigen Polysaccharide Substrate.
pubmed doi rcsb
molecule tags Transport protein
source organism Raoultella ornithinolytica
molecule keywords ABC transporter
total genus 43
structure length 161
sequence length 163
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14524 Wzt_C Wzt C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.50.60 Mainly Beta Distorted Sandwich Coagulation Factor XIII; Chain A, domain 1 abc- transporter (atp binding component) like domain 5hnpA00
5HNOA 5HNPA 2R5OA
chains in the Genus database with same CATH superfamily
2YOWA 4LN0A 4A02A 2BXWA 5E80A 4GOKC 1AJWA 5EMVA 4ALSA 2R5OA 3L15A 2JHTA 5HNOA 4JHPB 5ACGA 3GQQA 4OY7A 3RBQA 2VTCA 2JHXA 4GBOA 1GDFA 4JVFB 4GOJC 4ALCA 1FT3A 5L7KA 2XWXA 4JV8B 5HGUA 2JHZA 5HNPA 3JUAA 2JI0A 5AA7A 1FT0A 4ALTA 4QI8A 4JVBB 1KSGB 1KSHB 3T5GB 5ACJA 4ALQA 4EIRA 2JHUA 2LHSA 4B5QA 4RE1A 2YETA 2JHSA 2JHWA 2YOXA 5ACHA 3ZUDA 5F2UA 3KYSA 2JHVA 5DQ8A 1DOAB 5FTZA 2BEMA 4MAIA 3EIIA 4OY8A 1RHOA 5FOHA 5ACFA 1DS6B 5IJUA 1FSOA 1HH4D 1KMTA 4ALEA 4EISA 4FMRA 5DQEA 5TARB 4D7VA 2YOYA 1FSTA 4EISB 5FJQA 4OY6A 5EMWA 4D7UA 4MAHA 1KSJB 1QVYA 2BENA 3UAMA 4JV6B 5ACIA 4ALRA 3EJAA 2JHYA 5E8FA 3T5IA 4F38B 5TB5B
chains in the Genus database with same CATH topology
5HNOA 5HNPA 2R5OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HNO A;  5HNP A;  2R5O A; 
#chains in the Genus database with same CATH topology
 2YOW A;  4LN0 A;  4A02 A;  2BXW A;  5E80 A;  4GOK C;  1AJW A;  5EMV A;  4ALS A;  2R5O A;  3L15 A;  2JHT A;  5HNO A;  4JHP B;  5ACG A;  3GQQ A;  4OY7 A;  3RBQ A;  2VTC A;  2JHX A;  4GBO A;  1GDF A;  4JVF B;  4GOJ C;  4ALC A;  1FT3 A;  5L7K A;  2XWX A;  4JV8 B;  5HGU A;  2JHZ A;  5HNP A;  3JUA A;  2JI0 A;  5AA7 A;  1FT0 A;  4ALT A;  4QI8 A;  4JVB B;  1KSG B;  1KSH B;  3T5G B;  5ACJ A;  4ALQ A;  4EIR A;  2JHU A;  2LHS A;  4B5Q A;  4RE1 A;  2YET A;  2JHS A;  2JHW A;  2YOX A;  5ACH A;  3ZUD A;  5F2U A;  3KYS A;  2JHV A;  5DQ8 A;  1DOA B;  5FTZ A;  2BEM A;  4MAI A;  3EII A;  4OY8 A;  1RHO A;  5FOH A;  5ACF A;  1DS6 B;  5IJU A;  1FSO A;  1HH4 D;  1KMT A;  4ALE A;  4EIS A;  4FMR A;  5DQE A;  5TAR B;  4D7V A;  2YOY A;  1FST A;  4EIS B;  5FJQ A;  4OY6 A;  5EMW A;  4D7U A;  4MAH A;  1KSJ B;  1QVY A;  2BEN A;  3UAM A;  4JV6 B;  5ACI A;  4ALR A;  3EJA A;  2JHY A;  5E8F A;  3T5I A;  4F38 B;  5TB5 B; 
#chains in the Genus database with same CATH homology
 5HNO A;  5HNP A;  2R5O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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