5HNPA

The structure of the kdo-capped saccharide binding subunit of the o-12 specific abc transporter, wzt
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
163
structure length
161
Chain Sequence
VSVEELKAIQLRTTNEATGEKRFGSARAIIEDLTIYKSDGTTLAEKPLIKSGEEVTFDFTILASEEIKDIALGISMSKAQGGDIWGDSNIGAGSAITLRPGRQRIVYKATLPINSGDYLIHCGLAKVGDREELDQRRPMMKVKFWSARELGGVIHAPLKII
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transport protein
source organism Raoultella ornithinolytica
publication title The Klebsiella pneumoniae O12 ATP-binding Cassette (ABC) Transporter Recognizes the Terminal Residue of Its O-antigen Polysaccharide Substrate.
pubmed doi rcsb
molecule keywords ABC transporter
total genus 43
structure length 161
sequence length 163
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14524 Wzt_C Wzt C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.50.60 Mainly Beta Distorted Sandwich Coagulation Factor XIII; Chain A, domain 1 abc- transporter (atp binding component) like domain 5hnpA00
5HNOA 2R5OA 5HNPA
chains in the Genus database with same CATH superfamily
2YETA 4A02A 4OY6A 3EJAA 4ALRA 4QI8A 4GOJC 5E8FA 2BXWA 3JUAA 4MAHA 2R5OA 5FTZA 3UAMA 2JHTA 5DQEA 1FT0A 4D7VA 2JHYA 4GBOA 5DQ8A 1KSJB 1GDFA 5EMVA 5E80A 1QVYA 1DOAB 3T5GB 1FSTA 4ALSA 3EIIA 5IJUA 5FOHA 1KMTA 3L15A 4OY8A 5AA7A 4MAIA 4LN0A 4JV8B 5ACGA 4D7UA 4EISB 5ACIA 4ALCA 3T5IA 5HNOA 1DS6B 5EMWA 2JHSA 1RHOA 3GQQA 1HH4D 4ALQA 5L7KA 5F2UA 2BENA 2VTCA 5ACHA 2XWXA 4JHPB 3ZUDA 1FSOA 5TARB 4RE1A 5ACFA 5HNPA 4EISA 5TB5B 2BEMA 2LHSA 1AJWA 3KYSA 5FJQA 4JV6B 2JHVA 5ACJA 2YOYA 4ALTA 4EIRA 1KSGB 4F38B 2JHUA 2JHXA 3RBQA 2JI0A 5HGUA 4B5QA 4FMRA 2YOWA 1FT3A 4GOKC 4JVBB 2YOXA 4JVFB 2JHWA 2JHZA 1KSHB 4OY7A 4ALEA
chains in the Genus database with same CATH topology
5HNOA 2R5OA 5HNPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HNO A;  2R5O A;  5HNP A; 
#chains in the Genus database with same CATH topology
 2YET A;  4A02 A;  4OY6 A;  3EJA A;  4ALR A;  4QI8 A;  4GOJ C;  5E8F A;  2BXW A;  3JUA A;  4MAH A;  2R5O A;  5FTZ A;  3UAM A;  2JHT A;  5DQE A;  1FT0 A;  4D7V A;  2JHY A;  4GBO A;  5DQ8 A;  1KSJ B;  1GDF A;  5EMV A;  5E80 A;  1QVY A;  1DOA B;  3T5G B;  1FST A;  4ALS A;  3EII A;  5IJU A;  5FOH A;  1KMT A;  3L15 A;  4OY8 A;  5AA7 A;  4MAI A;  4LN0 A;  4JV8 B;  5ACG A;  4D7U A;  4EIS B;  5ACI A;  4ALC A;  3T5I A;  5HNO A;  1DS6 B;  5EMW A;  2JHS A;  1RHO A;  3GQQ A;  1HH4 D;  4ALQ A;  5L7K A;  5F2U A;  2BEN A;  2VTC A;  5ACH A;  2XWX A;  4JHP B;  3ZUD A;  1FSO A;  5TAR B;  4RE1 A;  5ACF A;  5HNP A;  4EIS A;  5TB5 B;  2BEM A;  2LHS A;  1AJW A;  3KYS A;  5FJQ A;  4JV6 B;  2JHV A;  5ACJ A;  2YOY A;  4ALT A;  4EIR A;  1KSG B;  4F38 B;  2JHU A;  2JHX A;  3RBQ A;  2JI0 A;  5HGU A;  4B5Q A;  4FMR A;  2YOW A;  1FT3 A;  4GOK C;  4JVB B;  2YOX A;  4JVF B;  2JHW A;  2JHZ A;  1KSH B;  4OY7 A;  4ALE A; 
#chains in the Genus database with same CATH homology
 5HNO A;  2R5O A;  5HNP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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