The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
43
|
sequence length |
163
|
structure length |
161
|
Chain Sequence |
VSVEELKAIQLRTTNEATGEKRFGSARAIIEDLTIYKSDGTTLAEKPLIKSGEEVTFDFTILASEEIKDIALGISMSKAQGGDIWGDSNIGAGSAITLRPGRQRIVYKATLPINSGDYLIHCGLAKVGDREELDQRRPMMKVKFWSARELGGVIHAPLKII
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The Klebsiella pneumoniae O12 ATP-binding Cassette (ABC) Transporter Recognizes the Terminal Residue of Its O-antigen Polysaccharide Substrate.
pubmed doi rcsb |
| molecule keywords |
ABC transporter
|
| molecule tags |
Transport protein
|
| source organism |
Raoultella ornithinolytica
|
| total genus |
43
|
| structure length |
161
|
| sequence length |
163
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2016-01-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF14524 | Wzt_C | Wzt C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Distorted Sandwich | Coagulation Factor XIII; Chain A, domain 1 | abc- transporter (atp binding component) like domain |
#chains in the Genus database with same CATH superfamily 2R5O A; 5HNP A; 5HNO A; #chains in the Genus database with same CATH topology 3L15 A; 2YOW A; 2BXW A; 2BEM A; 4OY7 A; 2VTC A; 3UAM A; 4JV8 B; 5F2U A; 4ALR A; 4EIR A; 5ACG A; 5L7K A; 5EMW A; 4GOJ C; 5HNP A; 5ACJ A; 5TB5 B; 4JVB B; 5TAR B; 4ALT A; 2JHW A; 4GOK C; 2JHU A; 5HNO A; 3GQQ A; 5EMV A; 1DOA B; 4ALC A; 4JV6 B; 5ACF A; 1KSG B; 2JHY A; 3EII A; 2JI0 A; 2JHT A; 4JVF B; 2BEN A; 4OY6 A; 4ALE A; 3JUA A; 4ALS A; 3T5I A; 1KSJ B; 4LN0 A; 5E8F A; 5FJQ A; 4A02 A; 1GDF A; 3RBQ A; 2LHS A; 1KMT A; 4JHP B; 2R5O A; 4GBO A; 3EJA A; 5HGU A; 5FOH A; 4MAH A; 1DS6 B; 2YOY A; 1AJW A; 3KYS A; 2JHX A; 5FTZ A; 1KSH B; 2YET A; 4ALQ A; 4RE1 A; 1FST A; 2YOX A; 5DQE A; 1HH4 D; 4MAI A; 2JHV A; 1FT3 A; 4B5Q A; 4EIS B; 5ACH A; 4D7U A; 4FMR A; 1QVY A; 4OY8 A; 2JHS A; 3ZUD A; 1RHO A; 4EIS A; 1FT0 A; 4QI8 A; 2JHZ A; 2XWX A; 4D7V A; 5AA7 A; 5IJU A; 5E80 A; 1FSO A; 5DQ8 A; 5ACI A; 3T5G B; 4F38 B; #chains in the Genus database with same CATH homology 2R5O A; 5HNP A; 5HNO A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
