5HT9A

Crystal structure of m-crystallin in the presence of nickel
Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
84
structure length
84
Chain Sequence
NAAEVIVYEHVNFGGKSFDATSDQPGAGDNLNDKISSIKVKSGTWRFYEYINYGGRYWDLGPGEYSSVESAGIPDNSISSFRQI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS3 (37-42)TIV1 (10-13)TVIII1 (65-68)TI1 (24-27)S7 (80-83)TIV5 (50-53)TII1 (31-34)TIV3 (28-31)TI2 (29-32)TIV4 (32-35)TIV6 (74-77)S4 (45-50)S6 (63-65)3H1 (68-71)S1 (4-10)S2 (14-20)S5 (54-60)Updating...
connected with : NaN
molecule tags Metal binding protein
source organism Methanosarcina acetivorans c2a
publication title Inconspicuous nickel-binding methanoarchaeal betagamma-crystallins
rcsb
molecule keywords Beta/gama crystallin family protein
total genus 23
structure length 84
sequence length 84
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-01-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00030 Crystall Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 5ht9A00
4W9BA 1PRSA 4JGFA 4AKAA 1GCSA 2JDGA 1ZWOA 4W9AA 1AMMA 1M8UA 1YHPA 2BB2A 1E7NA 1DSLA 3ENTA 4IAUA 4PSPA 4EL6A 2BV2A 3IAJA 3SNYA 1H4AX 3HZBA 1HA4A 1ZWMA 2M3TA 4NI3A 1BLBA 2M3UA 4PSRA 5HT8A 1ZIQA 1GAMA 2G98A 2A5MA 1HK0X 2M3CA 3CW3A 3SO1A 3ENUA 1ELPA 5HT9A 4GR7A 1BD7A 1I5IA 3LWKA 1OKIA 1YTQA 1A45A 2K1WA 2KP5A 3I9HA 1AG4A 2B1OA 2DADA 2JDFA 1ZIRA 2KFBA 2V2UA 3SNZA 2NBRA 1ZIEA 2K1XA 1A7HA 1HDFA 1NPSA 3HZ2A 4FD9A 1A5DA 3SO0A 3QK3A 1PRRA 1ZGTA 4GCRA
chains in the Genus database with same CATH superfamily
1GH5A 1AMMA 2BB2A 4IAUA 4PSPA 1G6EA 4PSRA 1ZIQA 2A5MA 1HK0X 4GR7A 1I5IA 1YTQA 1A7HA 1NPSA 2BV2A 4W9BA 1GCSA 2JDGA 1M8UA 1F53A 3IAJA 2M3TA 1BLBA 1GAMA 2M3CA 3CW3A 5HT9A 1ELPA 2KP5A 3I9HA 2V2UA 2DADA 1ZIRA 3SNZA 2K1XA 1A5DA 1ZGTA 4GCRA 4AKAA 1PRSA 1ZWOA 1YHPA 1E7NA 3ENTA 1HA4A 5HT8A 2G98A 1BD7A 1OKIA 1A45A 1WKTA 2K1WA 2NBRA 1ZIEA 3HZ2A 3QK3A 1BHUA 3UJZA 4JGFA 4W9AA 1DSLA 4EL6A 3SNYA 1H4AX 3HZBA 1ZWMA 4NI3A 2M3UA 1C01A 3SO1A 3ENUA 3LWKA 1AG4A 2B1OA 2JDFA 2KFBA 1HDFA 4FD9A 3SO0A 1PRRA
chains in the Genus database with same CATH topology
4W9BA 1PRSA 4JGFA 4AKAA 1GCSA 2JDGA 1ZWOA 4W9AA 1AMMA 1M8UA 1YHPA 2BB2A 1E7NA 1DSLA 3ENTA 4IAUA 4PSPA 4EL6A 2BV2A 3IAJA 3SNYA 1H4AX 3HZBA 1HA4A 1ZWMA 2M3TA 4NI3A 1BLBA 2M3UA 4PSRA 5HT8A 1ZIQA 1GAMA 2G98A 2A5MA 1HK0X 2M3CA 3CW3A 3SO1A 3ENUA 1ELPA 5HT9A 4GR7A 1BD7A 1I5IA 3LWKA 1OKIA 1YTQA 1A45A 2K1WA 2KP5A 3I9HA 1AG4A 2B1OA 2DADA 2JDFA 1ZIRA 2KFBA 2V2UA 3SNZA 2NBRA 1ZIEA 2K1XA 1A7HA 1HDFA 1NPSA 3HZ2A 4FD9A 1A5DA 3SO0A 3QK3A 1PRRA 1ZGTA 4GCRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4W9B A;  1PRS A;  4JGF A;  4AKA A;  1GCS A;  2JDG A;  1ZWO A;  4W9A A;  1AMM A;  1M8U A;  1YHP A;  2BB2 A;  1E7N A;  1DSL A;  3ENT A;  4IAU A;  4PSP A;  4EL6 A;  2BV2 A;  3IAJ A;  3SNY A;  1H4A X;  3HZB A;  1HA4 A;  1ZWM A;  2M3T A;  4NI3 A;  1BLB A;  2M3U A;  4PSR A;  5HT8 A;  1ZIQ A;  1GAM A;  2G98 A;  2A5M A;  1HK0 X;  2M3C A;  3CW3 A;  3SO1 A;  3ENU A;  1ELP A;  5HT9 A;  4GR7 A;  1BD7 A;  1I5I A;  3LWK A;  1OKI A;  1YTQ A;  1A45 A;  2K1W A;  2KP5 A;  3I9H A;  1AG4 A;  2B1O A;  2DAD A;  2JDF A;  1ZIR A;  2KFB A;  2V2U A;  3SNZ A;  2NBR A;  1ZIE A;  2K1X A;  1A7H A;  1HDF A;  1NPS A;  3HZ2 A;  4FD9 A;  1A5D A;  3SO0 A;  3QK3 A;  1PRR A;  1ZGT A;  4GCR A; 
#chains in the Genus database with same CATH topology
 1GH5 A;  1AMM A;  2BB2 A;  4IAU A;  4PSP A;  1G6E A;  4PSR A;  1ZIQ A;  2A5M A;  1HK0 X;  4GR7 A;  1I5I A;  1YTQ A;  1A7H A;  1NPS A;  2BV2 A;  4W9B A;  1GCS A;  2JDG A;  1M8U A;  1F53 A;  3IAJ A;  2M3T A;  1BLB A;  1GAM A;  2M3C A;  3CW3 A;  5HT9 A;  1ELP A;  2KP5 A;  3I9H A;  2V2U A;  2DAD A;  1ZIR A;  3SNZ A;  2K1X A;  1A5D A;  1ZGT A;  4GCR A;  4AKA A;  1PRS A;  1ZWO A;  1YHP A;  1E7N A;  3ENT A;  1HA4 A;  5HT8 A;  2G98 A;  1BD7 A;  1OKI A;  1A45 A;  1WKT A;  2K1W A;  2NBR A;  1ZIE A;  3HZ2 A;  3QK3 A;  1BHU A;  3UJZ A;  4JGF A;  4W9A A;  1DSL A;  4EL6 A;  3SNY A;  1H4A X;  3HZB A;  1ZWM A;  4NI3 A;  2M3U A;  1C01 A;  3SO1 A;  3ENU A;  3LWK A;  1AG4 A;  2B1O A;  2JDF A;  2KFB A;  1HDF A;  4FD9 A;  3SO0 A;  1PRR A; 
#chains in the Genus database with same CATH homology
 4W9B A;  1PRS A;  4JGF A;  4AKA A;  1GCS A;  2JDG A;  1ZWO A;  4W9A A;  1AMM A;  1M8U A;  1YHP A;  2BB2 A;  1E7N A;  1DSL A;  3ENT A;  4IAU A;  4PSP A;  4EL6 A;  2BV2 A;  3IAJ A;  3SNY A;  1H4A X;  3HZB A;  1HA4 A;  1ZWM A;  2M3T A;  4NI3 A;  1BLB A;  2M3U A;  4PSR A;  5HT8 A;  1ZIQ A;  1GAM A;  2G98 A;  2A5M A;  1HK0 X;  2M3C A;  3CW3 A;  3SO1 A;  3ENU A;  1ELP A;  5HT9 A;  4GR7 A;  1BD7 A;  1I5I A;  3LWK A;  1OKI A;  1YTQ A;  1A45 A;  2K1W A;  2KP5 A;  3I9H A;  1AG4 A;  2B1O A;  2DAD A;  2JDF A;  1ZIR A;  2KFB A;  2V2U A;  3SNZ A;  2NBR A;  1ZIE A;  2K1X A;  1A7H A;  1HDF A;  1NPS A;  3HZ2 A;  4FD9 A;  1A5D A;  3SO0 A;  3QK3 A;  1PRR A;  1ZGT A;  4GCR A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.