5J4T | Genus

Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	29
sequence length	133
structure length	133
Chain Sequence	GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
publication title	Distortion of the ligand molecule as a strategy for modulating binding affinity: Further studies involving complexes of jacalin with beta-substituted disaccharides. pubmed doi rcsb
molecule keywords	Agglutinin alpha chain
total genus	29
structure length	133
sequence length	133
chains with identical sequence	C, E, G
ec nomenclature
pdb deposition date	2016-04-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	5j4tA00

1UGYC 2BMZA 1UGWA 1TP8A 4R6QA 1WS5C 1M26A 1X1VA 5J50A 2BMYA 2GUDA 1J4SA 3VZGA 3MIVA 1XEZA 3LM1A 1TOQA 1JOTA 1XXQA 3R51A 4R6NA 2GUCA 4GX7A 1XXRA 2GUXA 5EXGA 4WOGA 5J51A 3O44A 3LL2A 1ZGSA 1WS4C 2BN0A 1KU8A 1C3NA 3MITA 3P8SA 2HYRA 4PITA 2NUOA 1J4UA 5J4TA 4PIUA 3LL0A 3VY7A 4PIFA 3VY6A 3LKYA 1ZGRA 5AV7A 5J4XA 1UH1A 1UGXA 3LL1A 1VBPA 1UGWC 2HYQA 1KUJA 1OUWA 2GUEA 3R52A 3VZFA 4AK4A 4R6RA 3WOBA 2JZ4A 5BN6E 3LLYA 1PXDA 3LLZA 3MIUA 1UGYA 3R50A 4PIKA 1UH0A 1WS5A 3VZEA 3WOCA 4R6OA 1WS4A 3AQGA 1JACA 1J4TA 3APAA 2GTYA 4R6PA 4MQ0A 4AKBA 2NU5A 4AKCA 1C3MA 5JM1A 1VBOA 1C3KA 4AKDA 4DDNA
chains in the Genus database with same CATH superfamily

1UGYC 2BMZA 1UGWA 1TP8A 1W99A 4R6QA 1WS5C 1M26A 1X1VA 5J50A 2BMYA 2GUDA 4ARYA 1J4SA 3VZGA 3MIVA 1XEZA 3LM1A 1TOQA 1JOTA 1XXQA 3R51A 4R6NA 2GUCA 4GX7A 1XXRA 2GUXA 1CIYA 5EXGA 4WOGA 5J51A 3O44A 3LL2A 4QX3A 1ZGSA 4QX0A 1WS4C 2BN0A 2C9KA 1KU8A 1C3NA 3MITA 3P8SA 2HYRA 4PITA 2NUOA 1J4UA 2QP2A 4W8JA 4PIUA 5J4TA 3LL0A 3VY7A 1JI6A 4MOAA 4PIFA 3VY6A 3LKYA 1ZGRA 5AV7A 5J4XA 1UH1A 1VMOA 1UGXA 3LL1A 1VBPA 4QX1A 1UGWC 2HYQA 1KUJA 1OUWA 2GUEA 3R52A 3VZFA 4AK4A 4R6RA 3WOBA 2JZ4A 5BN6E 3LLYA 1PXDA 3LLZA 3MIUA 1UGYA 3R50A 4PIKA 1UH0A 1WS5A 3VZEA 1DLCA 3WOCA 4D8MA 4QX2A 4R6OA 1WS4A 3TOWA 3AQGA 1JACA 1J4TA 3APAA 2GTYA 4R6PA 4MQ0A 4AKBA 2NU5A 1I5PA 4AKCA 1C3MA 3EB7A 5JM1A 4ARXA 1VBOA 1C3KA 4AKDA 4DDNA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1UGY C;  2BMZ A;  1UGW A;  1TP8 A;  4R6Q A;  1WS5 C;  1M26 A;  1X1V A;  5J50 A;  2BMY A;  2GUD A;  1J4S A;  3VZG A;  3MIV A;  1XEZ A;  3LM1 A;  1TOQ A;  1JOT A;  1XXQ A;  3R51 A;  4R6N A;  2GUC A;  4GX7 A;  1XXR A;  2GUX A;  5EXG A;  4WOG A;  5J51 A;  3O44 A;  3LL2 A;  1ZGS A;  1WS4 C;  2BN0 A;  1KU8 A;  1C3N A;  3MIT A;  3P8S A;  2HYR A;  4PIT A;  2NUO A;  1J4U A;  5J4T A;  4PIU A;  3LL0 A;  3VY7 A;  4PIF A;  3VY6 A;  3LKY A;  1ZGR A;  5AV7 A;  5J4X A;  1UH1 A;  1UGX A;  3LL1 A;  1VBP A;  1UGW C;  2HYQ A;  1KUJ A;  1OUW A;  2GUE A;  3R52 A;  3VZF A;  4AK4 A;  4R6R A;  3WOB A;  2JZ4 A;  5BN6 E;  3LLY A;  1PXD A;  3LLZ A;  3MIU A;  1UGY A;  3R50 A;  4PIK A;  1UH0 A;  1WS5 A;  3VZE A;  3WOC A;  4R6O A;  1WS4 A;  3AQG A;  1JAC A;  1J4T A;  3APA A;  2GTY A;  4R6P A;  4MQ0 A;  4AKB A;  2NU5 A;  4AKC A;  1C3M A;  5JM1 A;  1VBO A;  1C3K A;  4AKD A;  4DDN A; 
#chains in the Genus database with same CATH topology
 1UGY C;  2BMZ A;  1UGW A;  1TP8 A;  1W99 A;  4R6Q A;  1WS5 C;  1M26 A;  1X1V A;  5J50 A;  2BMY A;  2GUD A;  4ARY A;  1J4S A;  3VZG A;  3MIV A;  1XEZ A;  3LM1 A;  1TOQ A;  1JOT A;  1XXQ A;  3R51 A;  4R6N A;  2GUC A;  4GX7 A;  1XXR A;  2GUX A;  1CIY A;  5EXG A;  4WOG A;  5J51 A;  3O44 A;  3LL2 A;  4QX3 A;  1ZGS A;  4QX0 A;  1WS4 C;  2BN0 A;  2C9K A;  1KU8 A;  1C3N A;  3MIT A;  3P8S A;  2HYR A;  4PIT A;  2NUO A;  1J4U A;  2QP2 A;  4W8J A;  4PIU A;  5J4T A;  3LL0 A;  3VY7 A;  1JI6 A;  4MOA A;  4PIF A;  3VY6 A;  3LKY A;  1ZGR A;  5AV7 A;  5J4X A;  1UH1 A;  1VMO A;  1UGX A;  3LL1 A;  1VBP A;  4QX1 A;  1UGW C;  2HYQ A;  1KUJ A;  1OUW A;  2GUE A;  3R52 A;  3VZF A;  4AK4 A;  4R6R A;  3WOB A;  2JZ4 A;  5BN6 E;  3LLY A;  1PXD A;  3LLZ A;  3MIU A;  1UGY A;  3R50 A;  4PIK A;  1UH0 A;  1WS5 A;  3VZE A;  1DLC A;  3WOC A;  4D8M A;  4QX2 A;  4R6O A;  1WS4 A;  3TOW A;  3AQG A;  1JAC A;  1J4T A;  3APA A;  2GTY A;  4R6P A;  4MQ0 A;  4AKB A;  2NU5 A;  1I5P A;  4AKC A;  1C3M A;  3EB7 A;  5JM1 A;  4ARX A;  1VBO A;  1C3K A;  4AKD A;  4DDN A; 
#chains in the Genus database with same CATH homology
 1UGY C;  2BMZ A;  1UGW A;  1TP8 A;  4R6Q A;  1WS5 C;  1M26 A;  1X1V A;  5J50 A;  2BMY A;  2GUD A;  1J4S A;  3VZG A;  3MIV A;  1XEZ A;  3LM1 A;  1TOQ A;  1JOT A;  1XXQ A;  3R51 A;  4R6N A;  2GUC A;  4GX7 A;  1XXR A;  2GUX A;  5EXG A;  4WOG A;  5J51 A;  3O44 A;  3LL2 A;  1ZGS A;  1WS4 C;  2BN0 A;  1KU8 A;  1C3N A;  3MIT A;  3P8S A;  2HYR A;  4PIT A;  2NUO A;  1J4U A;  5J4T A;  4PIU A;  3LL0 A;  3VY7 A;  4PIF A;  3VY6 A;  3LKY A;  1ZGR A;  5AV7 A;  5J4X A;  1UH1 A;  1UGX A;  3LL1 A;  1VBP A;  1UGW C;  2HYQ A;  1KUJ A;  1OUW A;  2GUE A;  3R52 A;  3VZF A;  4AK4 A;  4R6R A;  3WOB A;  2JZ4 A;  5BN6 E;  3LLY A;  1PXD A;  3LLZ A;  3MIU A;  1UGY A;  3R50 A;  4PIK A;  1UH0 A;  1WS5 A;  3VZE A;  3WOC A;  4R6O A;  1WS4 A;  3AQG A;  1JAC A;  1J4T A;  3APA A;  2GTY A;  4R6P A;  4MQ0 A;  4AKB A;  2NU5 A;  4AKC A;  1C3M A;  5JM1 A;  1VBO A;  1C3K A;  4AKD A;  4DDN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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5J4TA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations