5J4X | Genus

Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	28
sequence length	133
structure length	133
Chain Sequence	GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
publication title	Distortion of the ligand molecule as a strategy for modulating binding affinity: Further studies involving complexes of jacalin with beta-substituted disaccharides. pubmed doi rcsb
molecule keywords	Agglutinin alpha chain
total genus	28
structure length	133
sequence length	133
chains with identical sequence	C, E, G
ec nomenclature
pdb deposition date	2016-04-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	5j4xA00

5J4TA 4PIKA 3VZGA 1M26A 1WS5C 2BMYA 3LKYA 3R52A 2BMZA 4AKCA 2BN0A 1C3KA 4AKBA 2HYQA 2GUDA 1XEZA 5J51A 5J4XA 1JACA 1JOTA 2HYRA 1X1VA 3MITA 3R50A 5AV7A 1ZGSA 5J50A 3WOBA 1WS4C 3VZFA 2GUCA 1UGYA 1VBPA 3MIUA 1VBOA 3R51A 5EXGA 3LM1A 3VY7A 1UH1A 3APAA 3LLZA 4AK4A 3AQGA 1C3MA 4R6QA 5BN6E 4DDNA 3O44A 1ZGRA 1J4SA 3P8SA 1OUWA 1UGWA 4AKDA 5JM1A 1UH0A 4GX7A 4PIFA 1XXQA 3LL2A 1WS5A 1J4TA 3VY6A 1TP8A 2JZ4A 3WOCA 3LL1A 1TOQA 2GUXA 4PITA 3LLYA 1UGYC 4R6NA 1UGXA 2NUOA 4R6RA 2NU5A 1XXRA 4PIUA 4WOGA 2GUEA 4MQ0A 1KUJA 1J4UA 1PXDA 4R6PA 1C3NA 3MIVA 3VZEA 1KU8A 2GTYA 3LL0A 4R6OA 1UGWC 1WS4A
chains in the Genus database with same CATH superfamily

5J4TA 4PIKA 3VZGA 1M26A 1WS5C 2BMYA 3LKYA 3R52A 4MOAA 2BMZA 4AKCA 2BN0A 1C3KA 4AKBA 2HYQA 4D8MA 2GUDA 4ARYA 1XEZA 5J51A 5J4XA 1JACA 1JOTA 1VMOA 2HYRA 1X1VA 3MITA 3R50A 4QX2A 5AV7A 4ARXA 1ZGSA 5J50A 3WOBA 1WS4C 3VZFA 2GUCA 4QX3A 1UGYA 1VBPA 3MIUA 1VBOA 3R51A 5EXGA 3LM1A 3VY7A 1UH1A 3APAA 3LLZA 4AK4A 1CIYA 3AQGA 1C3MA 4R6QA 5BN6E 4DDNA 3O44A 1ZGRA 1J4SA 3P8SA 1DLCA 1OUWA 1UGWA 4AKDA 1W99A 5JM1A 1UH0A 4GX7A 2C9KA 3EB7A 4PIFA 1XXQA 3LL2A 1WS5A 1I5PA 1J4TA 4QX1A 3VY6A 1TP8A 2JZ4A 3WOCA 3LL1A 1JI6A 1TOQA 2GUXA 4PITA 3LLYA 1UGYC 3TOWA 4R6NA 1UGXA 2NUOA 4R6RA 2NU5A 1XXRA 4PIUA 4WOGA 2GUEA 4MQ0A 1KUJA 1J4UA 1PXDA 4R6PA 1C3NA 2QP2A 3MIVA 3VZEA 1KU8A 4W8JA 2GTYA 3LL0A 4QX0A 4R6OA 1UGWC 1WS4A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5J4T A;  4PIK A;  3VZG A;  1M26 A;  1WS5 C;  2BMY A;  3LKY A;  3R52 A;  2BMZ A;  4AKC A;  2BN0 A;  1C3K A;  4AKB A;  2HYQ A;  2GUD A;  1XEZ A;  5J51 A;  5J4X A;  1JAC A;  1JOT A;  2HYR A;  1X1V A;  3MIT A;  3R50 A;  5AV7 A;  1ZGS A;  5J50 A;  3WOB A;  1WS4 C;  3VZF A;  2GUC A;  1UGY A;  1VBP A;  3MIU A;  1VBO A;  3R51 A;  5EXG A;  3LM1 A;  3VY7 A;  1UH1 A;  3APA A;  3LLZ A;  4AK4 A;  3AQG A;  1C3M A;  4R6Q A;  5BN6 E;  4DDN A;  3O44 A;  1ZGR A;  1J4S A;  3P8S A;  1OUW A;  1UGW A;  4AKD A;  5JM1 A;  1UH0 A;  4GX7 A;  4PIF A;  1XXQ A;  3LL2 A;  1WS5 A;  1J4T A;  3VY6 A;  1TP8 A;  2JZ4 A;  3WOC A;  3LL1 A;  1TOQ A;  2GUX A;  4PIT A;  3LLY A;  1UGY C;  4R6N A;  1UGX A;  2NUO A;  4R6R A;  2NU5 A;  1XXR A;  4PIU A;  4WOG A;  2GUE A;  4MQ0 A;  1KUJ A;  1J4U A;  1PXD A;  4R6P A;  1C3N A;  3MIV A;  3VZE A;  1KU8 A;  2GTY A;  3LL0 A;  4R6O A;  1UGW C;  1WS4 A; 
#chains in the Genus database with same CATH topology
 5J4T A;  4PIK A;  3VZG A;  1M26 A;  1WS5 C;  2BMY A;  3LKY A;  3R52 A;  4MOA A;  2BMZ A;  4AKC A;  2BN0 A;  1C3K A;  4AKB A;  2HYQ A;  4D8M A;  2GUD A;  4ARY A;  1XEZ A;  5J51 A;  5J4X A;  1JAC A;  1JOT A;  1VMO A;  2HYR A;  1X1V A;  3MIT A;  3R50 A;  4QX2 A;  5AV7 A;  4ARX A;  1ZGS A;  5J50 A;  3WOB A;  1WS4 C;  3VZF A;  2GUC A;  4QX3 A;  1UGY A;  1VBP A;  3MIU A;  1VBO A;  3R51 A;  5EXG A;  3LM1 A;  3VY7 A;  1UH1 A;  3APA A;  3LLZ A;  4AK4 A;  1CIY A;  3AQG A;  1C3M A;  4R6Q A;  5BN6 E;  4DDN A;  3O44 A;  1ZGR A;  1J4S A;  3P8S A;  1DLC A;  1OUW A;  1UGW A;  4AKD A;  1W99 A;  5JM1 A;  1UH0 A;  4GX7 A;  2C9K A;  3EB7 A;  4PIF A;  1XXQ A;  3LL2 A;  1WS5 A;  1I5P A;  1J4T A;  4QX1 A;  3VY6 A;  1TP8 A;  2JZ4 A;  3WOC A;  3LL1 A;  1JI6 A;  1TOQ A;  2GUX A;  4PIT A;  3LLY A;  1UGY C;  3TOW A;  4R6N A;  1UGX A;  2NUO A;  4R6R A;  2NU5 A;  1XXR A;  4PIU A;  4WOG A;  2GUE A;  4MQ0 A;  1KUJ A;  1J4U A;  1PXD A;  4R6P A;  1C3N A;  2QP2 A;  3MIV A;  3VZE A;  1KU8 A;  4W8J A;  2GTY A;  3LL0 A;  4QX0 A;  4R6O A;  1UGW C;  1WS4 A; 
#chains in the Genus database with same CATH homology
 5J4T A;  4PIK A;  3VZG A;  1M26 A;  1WS5 C;  2BMY A;  3LKY A;  3R52 A;  2BMZ A;  4AKC A;  2BN0 A;  1C3K A;  4AKB A;  2HYQ A;  2GUD A;  1XEZ A;  5J51 A;  5J4X A;  1JAC A;  1JOT A;  2HYR A;  1X1V A;  3MIT A;  3R50 A;  5AV7 A;  1ZGS A;  5J50 A;  3WOB A;  1WS4 C;  3VZF A;  2GUC A;  1UGY A;  1VBP A;  3MIU A;  1VBO A;  3R51 A;  5EXG A;  3LM1 A;  3VY7 A;  1UH1 A;  3APA A;  3LLZ A;  4AK4 A;  3AQG A;  1C3M A;  4R6Q A;  5BN6 E;  4DDN A;  3O44 A;  1ZGR A;  1J4S A;  3P8S A;  1OUW A;  1UGW A;  4AKD A;  5JM1 A;  1UH0 A;  4GX7 A;  4PIF A;  1XXQ A;  3LL2 A;  1WS5 A;  1J4T A;  3VY6 A;  1TP8 A;  2JZ4 A;  3WOC A;  3LL1 A;  1TOQ A;  2GUX A;  4PIT A;  3LLY A;  1UGY C;  4R6N A;  1UGX A;  2NUO A;  4R6R A;  2NU5 A;  1XXR A;  4PIU A;  4WOG A;  2GUE A;  4MQ0 A;  1KUJ A;  1J4U A;  1PXD A;  4R6P A;  1C3N A;  3MIV A;  3VZE A;  1KU8 A;  2GTY A;  3LL0 A;  4R6O A;  1UGW C;  1WS4 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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5J4XA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations