5J50A

Structure of tetrameric jacalin complexed with gal beta-(1,3) galnac-alpha-opnp
Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-5)S11 (124-132)S4 (37-44)TIV2 (33-36)S2 (11-19)TI1 (20-23)TIV1 (21-24)S7 (78-88)S3 (25-34)TIV3 (46-49)TVIa1 (59-62)TI2 (60-63)S8 (92-97)TI3 (88-91)S6 (65-75)TVIII1 (108-111)TIV5 (120-123)S10 (112-120)S9 (102-107)S5 (52-57)Updating...
connected with : NaN
molecule tags Sugar binding protein
publication title Structure of tetrameric jacalin complexed with Gal beta-(1,3) GalNAc-alpha-OPNP
rcsb
molecule keywords Agglutinin alpha chain
total genus 29
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2016-04-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 5j50A00
2BMYA 1UGWA 1PXDA 1TOQA 1WS5A 3MIUA 5J4XA 4AKCA 2JZ4A 1WS5C 2BMZA 3LL1A 4AKDA 3WOCA 1UGYC 1UH1A 4PITA 2GUDA 3VZGA 1X1VA 2BN0A 4R6PA 4WOGA 4R6QA 1TP8A 1KU8A 2NUOA 3WOBA 4R6NA 3AQGA 1J4UA 5EXGA 3LL0A 4MQ0A 3VZFA 1UGWC 2GUXA 1JACA 4PIKA 5AV7A 1ZGRA 3LLZA 3MITA 3VY6A 3APAA 5J50A 4GX7A 1WS4A 1J4TA 1OUWA 4AK4A 4PIUA 1J4SA 5J51A 3LKYA 1M26A 4DDNA 3R50A 1XXQA 1C3NA 3R51A 3R52A 4R6RA 3MIVA 4PIFA 1JOTA 2HYQA 1VBOA 1VBPA 3VY7A 2HYRA 1WS4C 2GUEA 1C3MA 3LL2A 4R6OA 3VZEA 5JM1A 4AKBA 1UH0A 1KUJA 1XXRA 3O44A 1UGYA 1XEZA 2GTYA 5J4TA 3P8SA 1C3KA 5BN6E 2NU5A 3LLYA 1UGXA 3LM1A 2GUCA 1ZGSA
chains in the Genus database with same CATH superfamily
2BMYA 1UGWA 1PXDA 4QX1A 1TOQA 1JI6A 1WS5A 3MIUA 5J4XA 4AKCA 2JZ4A 1WS5C 4W8JA 2BMZA 3LL1A 4AKDA 3WOCA 1UGYC 1UH1A 4PITA 2GUDA 3VZGA 1X1VA 2BN0A 4R6PA 4QX3A 4WOGA 4R6QA 1TP8A 1KU8A 4MOAA 2NUOA 3WOBA 4R6NA 3AQGA 1J4UA 5EXGA 3LL0A 4MQ0A 3VZFA 1UGWC 1CIYA 2GUXA 1JACA 1DLCA 4PIKA 5AV7A 1ZGRA 3LLZA 3MITA 3VY6A 3APAA 5J50A 4QX2A 4GX7A 1WS4A 1J4TA 1OUWA 4AK4A 4PIUA 1J4SA 5J51A 4ARYA 3LKYA 1M26A 4DDNA 3R50A 1XXQA 4ARXA 1C3NA 3R51A 3R52A 4R6RA 3MIVA 4PIFA 1JOTA 2HYQA 1VBOA 1W99A 1VBPA 3VY7A 2HYRA 2C9KA 1VMOA 1I5PA 4QX0A 1WS4C 2GUEA 1C3MA 2QP2A 3LL2A 4R6OA 3VZEA 5JM1A 4AKBA 1UH0A 1KUJA 1XXRA 3O44A 1UGYA 1XEZA 2GTYA 5J4TA 4D8MA 3P8SA 1C3KA 5BN6E 2NU5A 3LLYA 3TOWA 1UGXA 3LM1A 2GUCA 1ZGSA 3EB7A
chains in the Genus database with same CATH topology
2BMYA 1UGWA 1PXDA 1TOQA 1WS5A 3MIUA 5J4XA 4AKCA 2JZ4A 1WS5C 2BMZA 3LL1A 4AKDA 3WOCA 1UGYC 1UH1A 4PITA 2GUDA 3VZGA 1X1VA 2BN0A 4R6PA 4WOGA 4R6QA 1TP8A 1KU8A 2NUOA 3WOBA 4R6NA 3AQGA 1J4UA 5EXGA 3LL0A 4MQ0A 3VZFA 1UGWC 2GUXA 1JACA 4PIKA 5AV7A 1ZGRA 3LLZA 3MITA 3VY6A 3APAA 5J50A 4GX7A 1WS4A 1J4TA 1OUWA 4AK4A 4PIUA 1J4SA 5J51A 3LKYA 1M26A 4DDNA 3R50A 1XXQA 1C3NA 3R51A 3R52A 4R6RA 3MIVA 4PIFA 1JOTA 2HYQA 1VBOA 1VBPA 3VY7A 2HYRA 1WS4C 2GUEA 1C3MA 3LL2A 4R6OA 3VZEA 5JM1A 4AKBA 1UH0A 1KUJA 1XXRA 3O44A 1UGYA 1XEZA 2GTYA 5J4TA 3P8SA 1C3KA 5BN6E 2NU5A 3LLYA 1UGXA 3LM1A 2GUCA 1ZGSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BMY A;  1UGW A;  1PXD A;  1TOQ A;  1WS5 A;  3MIU A;  5J4X A;  4AKC A;  2JZ4 A;  1WS5 C;  2BMZ A;  3LL1 A;  4AKD A;  3WOC A;  1UGY C;  1UH1 A;  4PIT A;  2GUD A;  3VZG A;  1X1V A;  2BN0 A;  4R6P A;  4WOG A;  4R6Q A;  1TP8 A;  1KU8 A;  2NUO A;  3WOB A;  4R6N A;  3AQG A;  1J4U A;  5EXG A;  3LL0 A;  4MQ0 A;  3VZF A;  1UGW C;  2GUX A;  1JAC A;  4PIK A;  5AV7 A;  1ZGR A;  3LLZ A;  3MIT A;  3VY6 A;  3APA A;  5J50 A;  4GX7 A;  1WS4 A;  1J4T A;  1OUW A;  4AK4 A;  4PIU A;  1J4S A;  5J51 A;  3LKY A;  1M26 A;  4DDN A;  3R50 A;  1XXQ A;  1C3N A;  3R51 A;  3R52 A;  4R6R A;  3MIV A;  4PIF A;  1JOT A;  2HYQ A;  1VBO A;  1VBP A;  3VY7 A;  2HYR A;  1WS4 C;  2GUE A;  1C3M A;  3LL2 A;  4R6O A;  3VZE A;  5JM1 A;  4AKB A;  1UH0 A;  1KUJ A;  1XXR A;  3O44 A;  1UGY A;  1XEZ A;  2GTY A;  5J4T A;  3P8S A;  1C3K A;  5BN6 E;  2NU5 A;  3LLY A;  1UGX A;  3LM1 A;  2GUC A;  1ZGS A; 
#chains in the Genus database with same CATH topology
 2BMY A;  1UGW A;  1PXD A;  4QX1 A;  1TOQ A;  1JI6 A;  1WS5 A;  3MIU A;  5J4X A;  4AKC A;  2JZ4 A;  1WS5 C;  4W8J A;  2BMZ A;  3LL1 A;  4AKD A;  3WOC A;  1UGY C;  1UH1 A;  4PIT A;  2GUD A;  3VZG A;  1X1V A;  2BN0 A;  4R6P A;  4QX3 A;  4WOG A;  4R6Q A;  1TP8 A;  1KU8 A;  4MOA A;  2NUO A;  3WOB A;  4R6N A;  3AQG A;  1J4U A;  5EXG A;  3LL0 A;  4MQ0 A;  3VZF A;  1UGW C;  1CIY A;  2GUX A;  1JAC A;  1DLC A;  4PIK A;  5AV7 A;  1ZGR A;  3LLZ A;  3MIT A;  3VY6 A;  3APA A;  5J50 A;  4QX2 A;  4GX7 A;  1WS4 A;  1J4T A;  1OUW A;  4AK4 A;  4PIU A;  1J4S A;  5J51 A;  4ARY A;  3LKY A;  1M26 A;  4DDN A;  3R50 A;  1XXQ A;  4ARX A;  1C3N A;  3R51 A;  3R52 A;  4R6R A;  3MIV A;  4PIF A;  1JOT A;  2HYQ A;  1VBO A;  1W99 A;  1VBP A;  3VY7 A;  2HYR A;  2C9K A;  1VMO A;  1I5P A;  4QX0 A;  1WS4 C;  2GUE A;  1C3M A;  2QP2 A;  3LL2 A;  4R6O A;  3VZE A;  5JM1 A;  4AKB A;  1UH0 A;  1KUJ A;  1XXR A;  3O44 A;  1UGY A;  1XEZ A;  2GTY A;  5J4T A;  4D8M A;  3P8S A;  1C3K A;  5BN6 E;  2NU5 A;  3LLY A;  3TOW A;  1UGX A;  3LM1 A;  2GUC A;  1ZGS A;  3EB7 A; 
#chains in the Genus database with same CATH homology
 2BMY A;  1UGW A;  1PXD A;  1TOQ A;  1WS5 A;  3MIU A;  5J4X A;  4AKC A;  2JZ4 A;  1WS5 C;  2BMZ A;  3LL1 A;  4AKD A;  3WOC A;  1UGY C;  1UH1 A;  4PIT A;  2GUD A;  3VZG A;  1X1V A;  2BN0 A;  4R6P A;  4WOG A;  4R6Q A;  1TP8 A;  1KU8 A;  2NUO A;  3WOB A;  4R6N A;  3AQG A;  1J4U A;  5EXG A;  3LL0 A;  4MQ0 A;  3VZF A;  1UGW C;  2GUX A;  1JAC A;  4PIK A;  5AV7 A;  1ZGR A;  3LLZ A;  3MIT A;  3VY6 A;  3APA A;  5J50 A;  4GX7 A;  1WS4 A;  1J4T A;  1OUW A;  4AK4 A;  4PIU A;  1J4S A;  5J51 A;  3LKY A;  1M26 A;  4DDN A;  3R50 A;  1XXQ A;  1C3N A;  3R51 A;  3R52 A;  4R6R A;  3MIV A;  4PIF A;  1JOT A;  2HYQ A;  1VBO A;  1VBP A;  3VY7 A;  2HYR A;  1WS4 C;  2GUE A;  1C3M A;  3LL2 A;  4R6O A;  3VZE A;  5JM1 A;  4AKB A;  1UH0 A;  1KUJ A;  1XXR A;  3O44 A;  1UGY A;  1XEZ A;  2GTY A;  5J4T A;  3P8S A;  1C3K A;  5BN6 E;  2NU5 A;  3LLY A;  1UGX A;  3LM1 A;  2GUC A;  1ZGS A; 
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