5J51A

Structure of tetrameric jacalin complexed with gal alpha-(1,4) gal
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Effect of linkage on the location of reducing and nonreducing sugars bound to jacalin.
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
total genus 31
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2016-04-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 5j51A00
3VZEA 4AKDA 5J4TA 3MIUA 1UH0A 3APAA 3VZGA 4R6QA 2BN0A 1WS4C 4R6NA 5J4XA 4R6OA 1OUWA 1TOQA 3R52A 5EXGA 3LLYA 3VZFA 1KU8A 3LLZA 1UGWC 3R51A 5J51A 4PIKA 3LL0A 1XEZA 2JZ4A 4PIUA 2HYRA 1XXQA 3MITA 5JM1A 1WS5C 3LKYA 2GUXA 5BN6E 1UGYC 4MQ0A 5AV7A 1JOTA 2NUOA 4AKBA 1ZGRA 2GTYA 1C3KA 1JACA 1KUJA 3VY6A 1TP8A 1VBPA 4GX7A 2GUEA 2HYQA 4R6PA 1ZGSA 4PIFA 3VY7A 2GUCA 1X1VA 1C3MA 1M26A 3LL1A 1UGXA 3P8SA 3MIVA 3R50A 4WOGA 5J50A 3WOBA 1VBOA 4AK4A 1XXRA 1WS4A 2BMYA 1J4UA 4DDNA 4PITA 3WOCA 1UH1A 2NU5A 3AQGA 1UGWA 1J4SA 1J4TA 3LL2A 4AKCA 1C3NA 3LM1A 2BMZA 1WS5A 2GUDA 1UGYA 1PXDA 3O44A 4R6RA
chains in the Genus database with same CATH superfamily
2C9KA 3VZEA 4AKDA 5J4TA 3MIUA 1UH0A 3APAA 1JI6A 3VZGA 4R6QA 2BN0A 1WS4C 4R6NA 5J4XA 4R6OA 1OUWA 1TOQA 3R52A 4D8MA 5EXGA 3LLYA 3VZFA 1KU8A 3LLZA 1UGWC 3R51A 5J51A 4PIKA 3LL0A 1XEZA 4W8JA 2JZ4A 4PIUA 2HYRA 1XXQA 3MITA 5JM1A 1WS5C 3LKYA 2GUXA 5BN6E 1UGYC 4MQ0A 5AV7A 1JOTA 2NUOA 3TOWA 4AKBA 2GTYA 1C3KA 1JACA 1KUJA 1W99A 3VY6A 4QX3A 1TP8A 1VBPA 4GX7A 2GUEA 2HYQA 4R6PA 4ARXA 1ZGSA 4PIFA 3VY7A 2GUCA 1X1VA 1C3MA 2QP2A 4ARYA 1M26A 3LL1A 1UGXA 3P8SA 3MIVA 3R50A 4WOGA 5J50A 3WOBA 1VBOA 4AK4A 1XXRA 1WS4A 4QX0A 2BMYA 1J4UA 4DDNA 4PITA 3WOCA 1UH1A 2NU5A 3AQGA 1UGWA 4QX2A 4QX1A 1CIYA 4MOAA 1I5PA 3EB7A 1J4SA 1J4TA 3LL2A 4AKCA 1DLCA 1C3NA 3LM1A 2BMZA 1VMOA 1WS5A 2GUDA 1UGYA 4R6RA 1PXDA 3O44A 1ZGRA
chains in the Genus database with same CATH topology
3VZEA 4AKDA 5J4TA 3MIUA 1UH0A 3APAA 3VZGA 4R6QA 2BN0A 1WS4C 4R6NA 5J4XA 4R6OA 1OUWA 1TOQA 3R52A 5EXGA 3LLYA 3VZFA 1KU8A 3LLZA 1UGWC 3R51A 5J51A 4PIKA 3LL0A 1XEZA 2JZ4A 4PIUA 2HYRA 1XXQA 3MITA 5JM1A 1WS5C 3LKYA 2GUXA 5BN6E 1UGYC 4MQ0A 5AV7A 1JOTA 2NUOA 4AKBA 1ZGRA 2GTYA 1C3KA 1JACA 1KUJA 3VY6A 1TP8A 1VBPA 4GX7A 2GUEA 2HYQA 4R6PA 1ZGSA 4PIFA 3VY7A 2GUCA 1X1VA 1C3MA 1M26A 3LL1A 1UGXA 3P8SA 3MIVA 3R50A 4WOGA 5J50A 3WOBA 1VBOA 4AK4A 1XXRA 1WS4A 2BMYA 1J4UA 4DDNA 4PITA 3WOCA 1UH1A 2NU5A 3AQGA 1UGWA 1J4SA 1J4TA 3LL2A 4AKCA 1C3NA 3LM1A 2BMZA 1WS5A 2GUDA 1UGYA 1PXDA 3O44A 4R6RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VZE A;  4AKD A;  5J4T A;  3MIU A;  1UH0 A;  3APA A;  3VZG A;  4R6Q A;  2BN0 A;  1WS4 C;  4R6N A;  5J4X A;  4R6O A;  1OUW A;  1TOQ A;  3R52 A;  5EXG A;  3LLY A;  3VZF A;  1KU8 A;  3LLZ A;  1UGW C;  3R51 A;  5J51 A;  4PIK A;  3LL0 A;  1XEZ A;  2JZ4 A;  4PIU A;  2HYR A;  1XXQ A;  3MIT A;  5JM1 A;  1WS5 C;  3LKY A;  2GUX A;  5BN6 E;  1UGY C;  4MQ0 A;  5AV7 A;  1JOT A;  2NUO A;  4AKB A;  1ZGR A;  2GTY A;  1C3K A;  1JAC A;  1KUJ A;  3VY6 A;  1TP8 A;  1VBP A;  4GX7 A;  2GUE A;  2HYQ A;  4R6P A;  1ZGS A;  4PIF A;  3VY7 A;  2GUC A;  1X1V A;  1C3M A;  1M26 A;  3LL1 A;  1UGX A;  3P8S A;  3MIV A;  3R50 A;  4WOG A;  5J50 A;  3WOB A;  1VBO A;  4AK4 A;  1XXR A;  1WS4 A;  2BMY A;  1J4U A;  4DDN A;  4PIT A;  3WOC A;  1UH1 A;  2NU5 A;  3AQG A;  1UGW A;  1J4S A;  1J4T A;  3LL2 A;  4AKC A;  1C3N A;  3LM1 A;  2BMZ A;  1WS5 A;  2GUD A;  1UGY A;  1PXD A;  3O44 A;  4R6R A; 
#chains in the Genus database with same CATH topology
 2C9K A;  3VZE A;  4AKD A;  5J4T A;  3MIU A;  1UH0 A;  3APA A;  1JI6 A;  3VZG A;  4R6Q A;  2BN0 A;  1WS4 C;  4R6N A;  5J4X A;  4R6O A;  1OUW A;  1TOQ A;  3R52 A;  4D8M A;  5EXG A;  3LLY A;  3VZF A;  1KU8 A;  3LLZ A;  1UGW C;  3R51 A;  5J51 A;  4PIK A;  3LL0 A;  1XEZ A;  4W8J A;  2JZ4 A;  4PIU A;  2HYR A;  1XXQ A;  3MIT A;  5JM1 A;  1WS5 C;  3LKY A;  2GUX A;  5BN6 E;  1UGY C;  4MQ0 A;  5AV7 A;  1JOT A;  2NUO A;  3TOW A;  4AKB A;  2GTY A;  1C3K A;  1JAC A;  1KUJ A;  1W99 A;  3VY6 A;  4QX3 A;  1TP8 A;  1VBP A;  4GX7 A;  2GUE A;  2HYQ A;  4R6P A;  4ARX A;  1ZGS A;  4PIF A;  3VY7 A;  2GUC A;  1X1V A;  1C3M A;  2QP2 A;  4ARY A;  1M26 A;  3LL1 A;  1UGX A;  3P8S A;  3MIV A;  3R50 A;  4WOG A;  5J50 A;  3WOB A;  1VBO A;  4AK4 A;  1XXR A;  1WS4 A;  4QX0 A;  2BMY A;  1J4U A;  4DDN A;  4PIT A;  3WOC A;  1UH1 A;  2NU5 A;  3AQG A;  1UGW A;  4QX2 A;  4QX1 A;  1CIY A;  4MOA A;  1I5P A;  3EB7 A;  1J4S A;  1J4T A;  3LL2 A;  4AKC A;  1DLC A;  1C3N A;  3LM1 A;  2BMZ A;  1VMO A;  1WS5 A;  2GUD A;  1UGY A;  4R6R A;  1PXD A;  3O44 A;  1ZGR A; 
#chains in the Genus database with same CATH homology
 3VZE A;  4AKD A;  5J4T A;  3MIU A;  1UH0 A;  3APA A;  3VZG A;  4R6Q A;  2BN0 A;  1WS4 C;  4R6N A;  5J4X A;  4R6O A;  1OUW A;  1TOQ A;  3R52 A;  5EXG A;  3LLY A;  3VZF A;  1KU8 A;  3LLZ A;  1UGW C;  3R51 A;  5J51 A;  4PIK A;  3LL0 A;  1XEZ A;  2JZ4 A;  4PIU A;  2HYR A;  1XXQ A;  3MIT A;  5JM1 A;  1WS5 C;  3LKY A;  2GUX A;  5BN6 E;  1UGY C;  4MQ0 A;  5AV7 A;  1JOT A;  2NUO A;  4AKB A;  1ZGR A;  2GTY A;  1C3K A;  1JAC A;  1KUJ A;  3VY6 A;  1TP8 A;  1VBP A;  4GX7 A;  2GUE A;  2HYQ A;  4R6P A;  1ZGS A;  4PIF A;  3VY7 A;  2GUC A;  1X1V A;  1C3M A;  1M26 A;  3LL1 A;  1UGX A;  3P8S A;  3MIV A;  3R50 A;  4WOG A;  5J50 A;  3WOB A;  1VBO A;  4AK4 A;  1XXR A;  1WS4 A;  2BMY A;  1J4U A;  4DDN A;  4PIT A;  3WOC A;  1UH1 A;  2NU5 A;  3AQG A;  1UGW A;  1J4S A;  1J4T A;  3LL2 A;  4AKC A;  1C3N A;  3LM1 A;  2BMZ A;  1WS5 A;  2GUD A;  1UGY A;  1PXD A;  3O44 A;  4R6R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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