5JM1A

Structure of tetrameric jacalin complexed with a trisaccharide, gal alpha-(1,3) gal beta-(1,4) gal
Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-5)S11 (124-132)S4 (37-44)TIV2 (33-36)S2 (11-19)S7 (78-88)TIV1 (20-23)S3 (25-34)S10 (112-120)TVIa1 (59-62)TI1 (60-63)TIV4 (88-91)S8 (91-97)TVIII1 (61-64)S6 (65-75)TVIII2 (108-111)O1 (98-100)TIV5 (120-123)S9 (102-107)S5 (52-57)Updating...
connected with : NaN
molecule tags Sugar binding protein
publication title Effect of linkage on the location of reducing and nonreducing sugars bound to jacalin.
pubmed doi rcsb
molecule keywords Agglutinin alpha chain
total genus 29
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2016-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 5jm1A00
1TP8A 2NU5A 4PITA 2BN0A 1X1VA 5JM1A 1J4UA 1XXQA 4DDNA 2JZ4A 4PIFA 5BN6E 3LLYA 3WOCA 3R50A 1C3KA 3MITA 2HYQA 4AK4A 4R6PA 3O44A 1UGWA 5EXGA 1TOQA 3VZEA 1J4TA 1C3NA 1WS5C 1ZGSA 4R6RA 4AKDA 5J51A 3VY7A 4AKBA 2GUEA 1JOTA 3R51A 1XEZA 4AKCA 1OUWA 3VZFA 1VBPA 4PIUA 1M26A 3LLZA 3R52A 1ZGRA 2HYRA 2GUCA 3APAA 3LM1A 1UGXA 1UH1A 1UGYA 3VZGA 1WS4A 5AV7A 1UGWC 4R6OA 3WOBA 1C3MA 3AQGA 2NUOA 4GX7A 3MIUA 2GUXA 1XXRA 2BMYA 1PXDA 2BMZA 2GUDA 1KU8A 4PIKA 3VY6A 1VBOA 4R6QA 3LL0A 4R6NA 3LL1A 4WOGA 5J4TA 1UGYC 5J4XA 1WS4C 1J4SA 1JACA 1UH0A 2GTYA 3P8SA 5J50A 1WS5A 4MQ0A 1KUJA 3LL2A 3MIVA 3LKYA
chains in the Genus database with same CATH superfamily
1TP8A 2NU5A 4PITA 2BN0A 4D8MA 1X1VA 5JM1A 4MOAA 1J4UA 1XXQA 1I5PA 4DDNA 2JZ4A 4PIFA 1VMOA 5BN6E 3LLYA 1W99A 3R50A 3WOCA 1C3KA 3MITA 2HYQA 4AK4A 4R6PA 3O44A 1UGWA 5EXGA 1TOQA 3VZEA 1CIYA 4QX1A 2QP2A 1DLCA 1J4TA 1C3NA 1WS5C 1ZGSA 4R6RA 4AKDA 5J51A 3VY7A 4AKBA 2GUEA 1JOTA 3R51A 1XEZA 4AKCA 4W8JA 1OUWA 3TOWA 3VZFA 1VBPA 4PIUA 1M26A 3LLZA 3R52A 1ZGRA 4ARXA 1JI6A 2HYRA 4ARYA 2GUCA 3APAA 3LM1A 1UGXA 1UH1A 1UGYA 3VZGA 1WS4A 5AV7A 1UGWC 4R6OA 3WOBA 1C3MA 3AQGA 2NUOA 4GX7A 3MIUA 2GUXA 1XXRA 2BMYA 4QX2A 1PXDA 2BMZA 2GUDA 1KU8A 4PIKA 3VY6A 1VBOA 4R6QA 3LL0A 4R6NA 3LL1A 4QX0A 4WOGA 2C9KA 5J4TA 1UGYC 5J4XA 1WS4C 1J4SA 1JACA 1UH0A 2GTYA 3EB7A 3P8SA 5J50A 1WS5A 4MQ0A 1KUJA 4QX3A 3LL2A 3MIVA 3LKYA
chains in the Genus database with same CATH topology
1TP8A 2NU5A 4PITA 2BN0A 1X1VA 5JM1A 1J4UA 1XXQA 4DDNA 2JZ4A 4PIFA 5BN6E 3LLYA 3WOCA 3R50A 1C3KA 3MITA 2HYQA 4AK4A 4R6PA 3O44A 1UGWA 5EXGA 1TOQA 3VZEA 1J4TA 1C3NA 1WS5C 1ZGSA 4R6RA 4AKDA 5J51A 3VY7A 4AKBA 2GUEA 1JOTA 3R51A 1XEZA 4AKCA 1OUWA 3VZFA 1VBPA 4PIUA 1M26A 3LLZA 3R52A 1ZGRA 2HYRA 2GUCA 3APAA 3LM1A 1UGXA 1UH1A 1UGYA 3VZGA 1WS4A 5AV7A 1UGWC 4R6OA 3WOBA 1C3MA 3AQGA 2NUOA 4GX7A 3MIUA 2GUXA 1XXRA 2BMYA 1PXDA 2BMZA 2GUDA 1KU8A 4PIKA 3VY6A 1VBOA 4R6QA 3LL0A 4R6NA 3LL1A 4WOGA 5J4TA 1UGYC 5J4XA 1WS4C 1J4SA 1JACA 1UH0A 2GTYA 3P8SA 5J50A 1WS5A 4MQ0A 1KUJA 3LL2A 3MIVA 3LKYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TP8 A;  2NU5 A;  4PIT A;  2BN0 A;  1X1V A;  5JM1 A;  1J4U A;  1XXQ A;  4DDN A;  2JZ4 A;  4PIF A;  5BN6 E;  3LLY A;  3WOC A;  3R50 A;  1C3K A;  3MIT A;  2HYQ A;  4AK4 A;  4R6P A;  3O44 A;  1UGW A;  5EXG A;  1TOQ A;  3VZE A;  1J4T A;  1C3N A;  1WS5 C;  1ZGS A;  4R6R A;  4AKD A;  5J51 A;  3VY7 A;  4AKB A;  2GUE A;  1JOT A;  3R51 A;  1XEZ A;  4AKC A;  1OUW A;  3VZF A;  1VBP A;  4PIU A;  1M26 A;  3LLZ A;  3R52 A;  1ZGR A;  2HYR A;  2GUC A;  3APA A;  3LM1 A;  1UGX A;  1UH1 A;  1UGY A;  3VZG A;  1WS4 A;  5AV7 A;  1UGW C;  4R6O A;  3WOB A;  1C3M A;  3AQG A;  2NUO A;  4GX7 A;  3MIU A;  2GUX A;  1XXR A;  2BMY A;  1PXD A;  2BMZ A;  2GUD A;  1KU8 A;  4PIK A;  3VY6 A;  1VBO A;  4R6Q A;  3LL0 A;  4R6N A;  3LL1 A;  4WOG A;  5J4T A;  1UGY C;  5J4X A;  1WS4 C;  1J4S A;  1JAC A;  1UH0 A;  2GTY A;  3P8S A;  5J50 A;  1WS5 A;  4MQ0 A;  1KUJ A;  3LL2 A;  3MIV A;  3LKY A; 
#chains in the Genus database with same CATH topology
 1TP8 A;  2NU5 A;  4PIT A;  2BN0 A;  4D8M A;  1X1V A;  5JM1 A;  4MOA A;  1J4U A;  1XXQ A;  1I5P A;  4DDN A;  2JZ4 A;  4PIF A;  1VMO A;  5BN6 E;  3LLY A;  1W99 A;  3R50 A;  3WOC A;  1C3K A;  3MIT A;  2HYQ A;  4AK4 A;  4R6P A;  3O44 A;  1UGW A;  5EXG A;  1TOQ A;  3VZE A;  1CIY A;  4QX1 A;  2QP2 A;  1DLC A;  1J4T A;  1C3N A;  1WS5 C;  1ZGS A;  4R6R A;  4AKD A;  5J51 A;  3VY7 A;  4AKB A;  2GUE A;  1JOT A;  3R51 A;  1XEZ A;  4AKC A;  4W8J A;  1OUW A;  3TOW A;  3VZF A;  1VBP A;  4PIU A;  1M26 A;  3LLZ A;  3R52 A;  1ZGR A;  4ARX A;  1JI6 A;  2HYR A;  4ARY A;  2GUC A;  3APA A;  3LM1 A;  1UGX A;  1UH1 A;  1UGY A;  3VZG A;  1WS4 A;  5AV7 A;  1UGW C;  4R6O A;  3WOB A;  1C3M A;  3AQG A;  2NUO A;  4GX7 A;  3MIU A;  2GUX A;  1XXR A;  2BMY A;  4QX2 A;  1PXD A;  2BMZ A;  2GUD A;  1KU8 A;  4PIK A;  3VY6 A;  1VBO A;  4R6Q A;  3LL0 A;  4R6N A;  3LL1 A;  4QX0 A;  4WOG A;  2C9K A;  5J4T A;  1UGY C;  5J4X A;  1WS4 C;  1J4S A;  1JAC A;  1UH0 A;  2GTY A;  3EB7 A;  3P8S A;  5J50 A;  1WS5 A;  4MQ0 A;  1KUJ A;  4QX3 A;  3LL2 A;  3MIV A;  3LKY A; 
#chains in the Genus database with same CATH homology
 1TP8 A;  2NU5 A;  4PIT A;  2BN0 A;  1X1V A;  5JM1 A;  1J4U A;  1XXQ A;  4DDN A;  2JZ4 A;  4PIF A;  5BN6 E;  3LLY A;  3WOC A;  3R50 A;  1C3K A;  3MIT A;  2HYQ A;  4AK4 A;  4R6P A;  3O44 A;  1UGW A;  5EXG A;  1TOQ A;  3VZE A;  1J4T A;  1C3N A;  1WS5 C;  1ZGS A;  4R6R A;  4AKD A;  5J51 A;  3VY7 A;  4AKB A;  2GUE A;  1JOT A;  3R51 A;  1XEZ A;  4AKC A;  1OUW A;  3VZF A;  1VBP A;  4PIU A;  1M26 A;  3LLZ A;  3R52 A;  1ZGR A;  2HYR A;  2GUC A;  3APA A;  3LM1 A;  1UGX A;  1UH1 A;  1UGY A;  3VZG A;  1WS4 A;  5AV7 A;  1UGW C;  4R6O A;  3WOB A;  1C3M A;  3AQG A;  2NUO A;  4GX7 A;  3MIU A;  2GUX A;  1XXR A;  2BMY A;  1PXD A;  2BMZ A;  2GUD A;  1KU8 A;  4PIK A;  3VY6 A;  1VBO A;  4R6Q A;  3LL0 A;  4R6N A;  3LL1 A;  4WOG A;  5J4T A;  1UGY C;  5J4X A;  1WS4 C;  1J4S A;  1JAC A;  1UH0 A;  2GTY A;  3P8S A;  5J50 A;  1WS5 A;  4MQ0 A;  1KUJ A;  3LL2 A;  3MIV A;  3LKY A; 
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