5JM1A

Structure of tetrameric jacalin complexed with a trisaccharide, gal alpha-(1,3) gal beta-(1,4) gal
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Effect of linkage on the location of reducing and nonreducing sugars bound to jacalin.
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
total genus 29
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2016-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 5jm1A00
1C3NA 1J4UA 2NUOA 4PITA 4GX7A 1ZGSA 3MIUA 4R6PA 3MIVA 3VZEA 5J51A 2GUEA 1VBPA 2HYRA 1TP8A 1WS5C 1KU8A 3O44A 3LKYA 1X1VA 3LL2A 5J4XA 2GUXA 5JM1A 2JZ4A 4MQ0A 3VZFA 2BN0A 1UGWC 5J4TA 5J50A 1PXDA 3LL1A 3LL0A 1XXQA 1C3KA 2GUDA 1WS4C 4R6NA 1UGWA 3WOBA 2NU5A 1UH0A 4R6QA 3LLZA 2HYQA 4AKDA 1M26A 3LLYA 1UGYC 3APAA 3MITA 2GTYA 1C3MA 2BMZA 4DDNA 1XXRA 3LM1A 1WS5A 4AKCA 3VY7A 1TOQA 3VZGA 1UH1A 1VBOA 4WOGA 1J4TA 4AKBA 4AK4A 4PIFA 3R50A 2GUCA 5BN6E 3WOCA 1J4SA 1JOTA 1WS4A 1UGXA 1XEZA 1KUJA 1OUWA 4R6OA 1ZGRA 4PIUA 3VY6A 1UGYA 2BMYA 5EXGA 4R6RA 3P8SA 3AQGA 1JACA 4PIKA 3R51A 3R52A 5AV7A
chains in the Genus database with same CATH superfamily
1C3NA 1J4UA 2NUOA 4PITA 4GX7A 3TOWA 1I5PA 1ZGSA 3MIUA 4R6PA 1W99A 3MIVA 3VZEA 5J51A 2GUEA 1VBPA 2HYRA 1TP8A 1WS5C 1KU8A 3O44A 3LKYA 1X1VA 1VMOA 3LL2A 5J4XA 2GUXA 4ARYA 2JZ4A 5JM1A 4QX3A 4MQ0A 3VZFA 2BN0A 1UGWC 4QX0A 5J4TA 5J50A 1PXDA 3LL1A 3LL0A 1XXQA 1C3KA 4QX1A 2GUDA 1WS4C 4R6NA 1UGWA 3WOBA 2NU5A 1UH0A 4R6QA 3LLZA 2HYQA 4AKDA 1CIYA 1M26A 3LLYA 1UGYC 3APAA 3MITA 2GTYA 1C3MA 2BMZA 4MOAA 4DDNA 1XXRA 3LM1A 1WS5A 4D8MA 4AKCA 3VY7A 1TOQA 3VZGA 1UH1A 1VBOA 2QP2A 4WOGA 1J4TA 4AKBA 4AK4A 4W8JA 4PIFA 2C9KA 3R50A 2GUCA 5BN6E 3WOCA 1J4SA 1DLCA 1JOTA 1WS4A 1UGXA 1XEZA 1KUJA 1OUWA 4R6OA 1ZGRA 4PIUA 3VY6A 1JI6A 1UGYA 2BMYA 5EXGA 3EB7A 4R6RA 3P8SA 3AQGA 4QX2A 1JACA 4PIKA 4ARXA 3R51A 3R52A 5AV7A
chains in the Genus database with same CATH topology
1C3NA 1J4UA 2NUOA 4PITA 4GX7A 1ZGSA 3MIUA 4R6PA 3MIVA 3VZEA 5J51A 2GUEA 1VBPA 2HYRA 1TP8A 1WS5C 1KU8A 3O44A 3LKYA 1X1VA 3LL2A 5J4XA 2GUXA 5JM1A 2JZ4A 4MQ0A 3VZFA 2BN0A 1UGWC 5J4TA 5J50A 1PXDA 3LL1A 3LL0A 1XXQA 1C3KA 2GUDA 1WS4C 4R6NA 1UGWA 3WOBA 2NU5A 1UH0A 4R6QA 3LLZA 2HYQA 4AKDA 1M26A 3LLYA 1UGYC 3APAA 3MITA 2GTYA 1C3MA 2BMZA 4DDNA 1XXRA 3LM1A 1WS5A 4AKCA 3VY7A 1TOQA 3VZGA 1UH1A 1VBOA 4WOGA 1J4TA 4AKBA 4AK4A 4PIFA 3R50A 2GUCA 5BN6E 3WOCA 1J4SA 1JOTA 1WS4A 1UGXA 1XEZA 1KUJA 1OUWA 4R6OA 1ZGRA 4PIUA 3VY6A 1UGYA 2BMYA 5EXGA 4R6RA 3P8SA 3AQGA 1JACA 4PIKA 3R51A 3R52A 5AV7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1C3N A;  1J4U A;  2NUO A;  4PIT A;  4GX7 A;  1ZGS A;  3MIU A;  4R6P A;  3MIV A;  3VZE A;  5J51 A;  2GUE A;  1VBP A;  2HYR A;  1TP8 A;  1WS5 C;  1KU8 A;  3O44 A;  3LKY A;  1X1V A;  3LL2 A;  5J4X A;  2GUX A;  5JM1 A;  2JZ4 A;  4MQ0 A;  3VZF A;  2BN0 A;  1UGW C;  5J4T A;  5J50 A;  1PXD A;  3LL1 A;  3LL0 A;  1XXQ A;  1C3K A;  2GUD A;  1WS4 C;  4R6N A;  1UGW A;  3WOB A;  2NU5 A;  1UH0 A;  4R6Q A;  3LLZ A;  2HYQ A;  4AKD A;  1M26 A;  3LLY A;  1UGY C;  3APA A;  3MIT A;  2GTY A;  1C3M A;  2BMZ A;  4DDN A;  1XXR A;  3LM1 A;  1WS5 A;  4AKC A;  3VY7 A;  1TOQ A;  3VZG A;  1UH1 A;  1VBO A;  4WOG A;  1J4T A;  4AKB A;  4AK4 A;  4PIF A;  3R50 A;  2GUC A;  5BN6 E;  3WOC A;  1J4S A;  1JOT A;  1WS4 A;  1UGX A;  1XEZ A;  1KUJ A;  1OUW A;  4R6O A;  1ZGR A;  4PIU A;  3VY6 A;  1UGY A;  2BMY A;  5EXG A;  4R6R A;  3P8S A;  3AQG A;  1JAC A;  4PIK A;  3R51 A;  3R52 A;  5AV7 A; 
#chains in the Genus database with same CATH topology
 1C3N A;  1J4U A;  2NUO A;  4PIT A;  4GX7 A;  3TOW A;  1I5P A;  1ZGS A;  3MIU A;  4R6P A;  1W99 A;  3MIV A;  3VZE A;  5J51 A;  2GUE A;  1VBP A;  2HYR A;  1TP8 A;  1WS5 C;  1KU8 A;  3O44 A;  3LKY A;  1X1V A;  1VMO A;  3LL2 A;  5J4X A;  2GUX A;  4ARY A;  2JZ4 A;  5JM1 A;  4QX3 A;  4MQ0 A;  3VZF A;  2BN0 A;  1UGW C;  4QX0 A;  5J4T A;  5J50 A;  1PXD A;  3LL1 A;  3LL0 A;  1XXQ A;  1C3K A;  4QX1 A;  2GUD A;  1WS4 C;  4R6N A;  1UGW A;  3WOB A;  2NU5 A;  1UH0 A;  4R6Q A;  3LLZ A;  2HYQ A;  4AKD A;  1CIY A;  1M26 A;  3LLY A;  1UGY C;  3APA A;  3MIT A;  2GTY A;  1C3M A;  2BMZ A;  4MOA A;  4DDN A;  1XXR A;  3LM1 A;  1WS5 A;  4D8M A;  4AKC A;  3VY7 A;  1TOQ A;  3VZG A;  1UH1 A;  1VBO A;  2QP2 A;  4WOG A;  1J4T A;  4AKB A;  4AK4 A;  4W8J A;  4PIF A;  2C9K A;  3R50 A;  2GUC A;  5BN6 E;  3WOC A;  1J4S A;  1DLC A;  1JOT A;  1WS4 A;  1UGX A;  1XEZ A;  1KUJ A;  1OUW A;  4R6O A;  1ZGR A;  4PIU A;  3VY6 A;  1JI6 A;  1UGY A;  2BMY A;  5EXG A;  3EB7 A;  4R6R A;  3P8S A;  3AQG A;  4QX2 A;  1JAC A;  4PIK A;  4ARX A;  3R51 A;  3R52 A;  5AV7 A; 
#chains in the Genus database with same CATH homology
 1C3N A;  1J4U A;  2NUO A;  4PIT A;  4GX7 A;  1ZGS A;  3MIU A;  4R6P A;  3MIV A;  3VZE A;  5J51 A;  2GUE A;  1VBP A;  2HYR A;  1TP8 A;  1WS5 C;  1KU8 A;  3O44 A;  3LKY A;  1X1V A;  3LL2 A;  5J4X A;  2GUX A;  5JM1 A;  2JZ4 A;  4MQ0 A;  3VZF A;  2BN0 A;  1UGW C;  5J4T A;  5J50 A;  1PXD A;  3LL1 A;  3LL0 A;  1XXQ A;  1C3K A;  2GUD A;  1WS4 C;  4R6N A;  1UGW A;  3WOB A;  2NU5 A;  1UH0 A;  4R6Q A;  3LLZ A;  2HYQ A;  4AKD A;  1M26 A;  3LLY A;  1UGY C;  3APA A;  3MIT A;  2GTY A;  1C3M A;  2BMZ A;  4DDN A;  1XXR A;  3LM1 A;  1WS5 A;  4AKC A;  3VY7 A;  1TOQ A;  3VZG A;  1UH1 A;  1VBO A;  4WOG A;  1J4T A;  4AKB A;  4AK4 A;  4PIF A;  3R50 A;  2GUC A;  5BN6 E;  3WOC A;  1J4S A;  1JOT A;  1WS4 A;  1UGX A;  1XEZ A;  1KUJ A;  1OUW A;  4R6O A;  1ZGR A;  4PIU A;  3VY6 A;  1UGY A;  2BMY A;  5EXG A;  4R6R A;  3P8S A;  3AQG A;  1JAC A;  4PIK A;  3R51 A;  3R52 A;  5AV7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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