5KO7A

Crystal structure of haliscomenobacter hydrossis iodotyrosine deiodinase (iyd) bound to fmn
Total Genus 48
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
220
structure length
202
Chain Sequence
PAFIPYAGAQFEPEEMLSKSAEYYQFMDHRRTVREFSNRAIPLEVIENIVMTASTAPSGAHKQPWTFVVVSDPQIKAKIRQAAEKEEFESDWHKPFLEIAPYLIVVFRKAYDVLPDGTQRKNYYVQESVGIACGFLLAAIHQAGLVALTHTPSPMNFLQKILQRPENERPFLLVPVGYPAEGAMVPDLQRKDKAAVMVVYHH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Active Site Binding Is Not Sufficient for Reductive Deiodination by Iodotyrosine Deiodinase.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Haliscomenobacter hydrossis (strain atcc 27775 / dsm 1100 / lmg 10767 / o)
molecule keywords Nitroreductase
total genus 48
structure length 202
sequence length 220
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00881 Nitroreductase Nitroreductase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 5ko7A00
3EO7A 1KQCA 4XOOA 2ISJA 3G14A 1ICVA 1YKIA 4TTBA 1NOXA 1OOQA 4DN2A 1OO5A 4EO3A 2YMVA 3GAGA 3EK3A 4BNBA 1KQBA 3QDLA 4BN7A 4BN6A 3X22A 3BM1A 1OONA 3HZNA 3EOFA 1VFRA 3GFDA 1ICUA 3OF4A 4G8SA 2FREA 2ISLA 1BKJA 2HAYA 1OO6A 1ICRA 5J6CA 1ZCHA 3GH8A 3GB5A 4BN9A 3E39A 4URPA 4TTCA 1IDTA 3TNZA 3BM2A 2BKJA 4BN8A 1DS7A 1V5YA 3GE5A 1YWQA 2WZVA 5KO7A 5KO8A 1V5ZA 4XOQA 1KQDA 5HDJA 3HJ9A 3N2SA 2H0UA 3BEMA 4XOMA 3K6HA 3E10A 2WQFA 3KOQA 2I7HA 5KRDA 3H4OA 2R01A 3GR3A 4QLYA 3PXVA 3KWKA 3GE6A 3M5KA 1YLRA 1NECA 2WZWA 5HEIA 3TO0A 1VKWA 4QLXA 3X21A 1F5VA 1YLUA 3HOIA 2ISKA 3EO8A 3GBHA 2IFAA 2B67A 3GFAA
chains in the Genus database with same CATH superfamily
3EO7A 1J6RA 1KQCA 4XOOA 2ISJA 3G14A 1ICVA 1YKIA 4TTBA 1NOXA 1OOQA 4DN2A 1OO5A 4EO3A 2YMVA 3GAGA 3EK3A 4BNBA 1KQBA 3QDLA 4BN7A 4BN6A 3X22A 3BM1A 1OONA 3HZNA 3EOFA 1VFRA 3GFDA 1ICUA 3OF4A 4G8SA 2FREA 2ISLA 1BKJA 2HAYA 1OO6A 1ICRA 5J6CA 1ZCHA 3GH8A 3GB5A 4BN9A 3E39A 4URPA 4TTCA 1IDTA 3TNZA 3BM2A 2BKJA 4BN8A 1DS7A 1V5YA 3GE5A 1YWQA 2WZVA 5KO7A 5KO8A 1V5ZA 4XOQA 1KQDA 5HDJA 3HJ9A 3N2SA 2H0UA 3BEMA 4XOMA 3K6HA 3E10A 2WQFA 3KOQA 2I7HA 5KRDA 3H4OA 2R01A 3GR3A 4QLYA 3PXVA 3KWKA 3GE6A 3M5KA 1YLRA 1NECA 2WZWA 5HEIA 3TO0A 1VKWA 4QLXA 3X21A 1F5VA 1YLUA 3HOIA 2ISKA 3EO8A 3GBHA 2IFAA 2B67A 3GFAA
chains in the Genus database with same CATH topology
3EO7A 1J6RA 1KQCA 4XOOA 2ISJA 3G14A 1ICVA 1YKIA 4TTBA 1NOXA 1OOQA 4DN2A 1OO5A 4EO3A 2YMVA 3GAGA 3EK3A 4BNBA 1KQBA 3QDLA 4BN7A 4BN6A 3X22A 3BM1A 1OONA 3HZNA 3EOFA 1VFRA 3GFDA 1ICUA 3OF4A 4G8SA 2FREA 2ISLA 1BKJA 2HAYA 1OO6A 1ICRA 5J6CA 1ZCHA 3GH8A 3GB5A 4BN9A 3E39A 4URPA 4TTCA 1IDTA 3TNZA 3BM2A 2BKJA 4BN8A 1DS7A 1V5YA 3GE5A 1YWQA 2WZVA 5KO7A 5KO8A 1V5ZA 4XOQA 1KQDA 5HDJA 3HJ9A 3N2SA 2H0UA 3BEMA 4XOMA 3K6HA 3E10A 2WQFA 3KOQA 2I7HA 5KRDA 3H4OA 2R01A 3GR3A 4QLYA 3PXVA 3KWKA 3GE6A 3M5KA 1YLRA 1NECA 2WZWA 5HEIA 3TO0A 1VKWA 4QLXA 3X21A 1F5VA 1YLUA 3HOIA 2ISKA 3EO8A 3GBHA 2IFAA 2B67A 3GFAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EO7 A;  1KQC A;  4XOO A;  2ISJ A;  3G14 A;  1ICV A;  1YKI A;  4TTB A;  1NOX A;  1OOQ A;  4DN2 A;  1OO5 A;  4EO3 A;  2YMV A;  3GAG A;  3EK3 A;  4BNB A;  1KQB A;  3QDL A;  4BN7 A;  4BN6 A;  3X22 A;  3BM1 A;  1OON A;  3HZN A;  3EOF A;  1VFR A;  3GFD A;  1ICU A;  3OF4 A;  4G8S A;  2FRE A;  2ISL A;  1BKJ A;  2HAY A;  1OO6 A;  1ICR A;  5J6C A;  1ZCH A;  3GH8 A;  3GB5 A;  4BN9 A;  3E39 A;  4URP A;  4TTC A;  1IDT A;  3TNZ A;  3BM2 A;  2BKJ A;  4BN8 A;  1DS7 A;  1V5Y A;  3GE5 A;  1YWQ A;  2WZV A;  5KO7 A;  5KO8 A;  1V5Z A;  4XOQ A;  1KQD A;  5HDJ A;  3HJ9 A;  3N2S A;  2H0U A;  3BEM A;  4XOM A;  3K6H A;  3E10 A;  2WQF A;  3KOQ A;  2I7H A;  5KRD A;  3H4O A;  2R01 A;  3GR3 A;  4QLY A;  3PXV A;  3KWK A;  3GE6 A;  3M5K A;  1YLR A;  1NEC A;  2WZW A;  5HEI A;  3TO0 A;  1VKW A;  4QLX A;  3X21 A;  1F5V A;  1YLU A;  3HOI A;  2ISK A;  3EO8 A;  3GBH A;  2IFA A;  2B67 A;  3GFA A; 
#chains in the Genus database with same CATH topology
 3EO7 A;  1J6R A;  1KQC A;  4XOO A;  2ISJ A;  3G14 A;  1ICV A;  1YKI A;  4TTB A;  1NOX A;  1OOQ A;  4DN2 A;  1OO5 A;  4EO3 A;  2YMV A;  3GAG A;  3EK3 A;  4BNB A;  1KQB A;  3QDL A;  4BN7 A;  4BN6 A;  3X22 A;  3BM1 A;  1OON A;  3HZN A;  3EOF A;  1VFR A;  3GFD A;  1ICU A;  3OF4 A;  4G8S A;  2FRE A;  2ISL A;  1BKJ A;  2HAY A;  1OO6 A;  1ICR A;  5J6C A;  1ZCH A;  3GH8 A;  3GB5 A;  4BN9 A;  3E39 A;  4URP A;  4TTC A;  1IDT A;  3TNZ A;  3BM2 A;  2BKJ A;  4BN8 A;  1DS7 A;  1V5Y A;  3GE5 A;  1YWQ A;  2WZV A;  5KO7 A;  5KO8 A;  1V5Z A;  4XOQ A;  1KQD A;  5HDJ A;  3HJ9 A;  3N2S A;  2H0U A;  3BEM A;  4XOM A;  3K6H A;  3E10 A;  2WQF A;  3KOQ A;  2I7H A;  5KRD A;  3H4O A;  2R01 A;  3GR3 A;  4QLY A;  3PXV A;  3KWK A;  3GE6 A;  3M5K A;  1YLR A;  1NEC A;  2WZW A;  5HEI A;  3TO0 A;  1VKW A;  4QLX A;  3X21 A;  1F5V A;  1YLU A;  3HOI A;  2ISK A;  3EO8 A;  3GBH A;  2IFA A;  2B67 A;  3GFA A; 
#chains in the Genus database with same CATH homology
 3EO7 A;  1J6R A;  1KQC A;  4XOO A;  2ISJ A;  3G14 A;  1ICV A;  1YKI A;  4TTB A;  1NOX A;  1OOQ A;  4DN2 A;  1OO5 A;  4EO3 A;  2YMV A;  3GAG A;  3EK3 A;  4BNB A;  1KQB A;  3QDL A;  4BN7 A;  4BN6 A;  3X22 A;  3BM1 A;  1OON A;  3HZN A;  3EOF A;  1VFR A;  3GFD A;  1ICU A;  3OF4 A;  4G8S A;  2FRE A;  2ISL A;  1BKJ A;  2HAY A;  1OO6 A;  1ICR A;  5J6C A;  1ZCH A;  3GH8 A;  3GB5 A;  4BN9 A;  3E39 A;  4URP A;  4TTC A;  1IDT A;  3TNZ A;  3BM2 A;  2BKJ A;  4BN8 A;  1DS7 A;  1V5Y A;  3GE5 A;  1YWQ A;  2WZV A;  5KO7 A;  5KO8 A;  1V5Z A;  4XOQ A;  1KQD A;  5HDJ A;  3HJ9 A;  3N2S A;  2H0U A;  3BEM A;  4XOM A;  3K6H A;  3E10 A;  2WQF A;  3KOQ A;  2I7H A;  5KRD A;  3H4O A;  2R01 A;  3GR3 A;  4QLY A;  3PXV A;  3KWK A;  3GE6 A;  3M5K A;  1YLR A;  1NEC A;  2WZW A;  5HEI A;  3TO0 A;  1VKW A;  4QLX A;  3X21 A;  1F5V A;  1YLU A;  3HOI A;  2ISK A;  3EO8 A;  3GBH A;  2IFA A;  2B67 A;  3GFA A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...