5AA7 | Genus

Total Genus 42

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	42
sequence length	142
structure length	142
Chain Sequence	HGWVTDPPSRQALCASGETSFDCGQISYEPQSVEAPKGATTCSGGNEAFAILDDNSKPWPTTEIASTVDLTWKLTAPHNTSTWEYFVDGQLHQTFDQKGQQPPTSLTHTLTDLPTGEHTILARWNVSNTNNAFYNCMDVVVS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5d040716d1fb7b7c5edca749/pdb.gz): 1532 ms

reading 142 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

142 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 18 ms

Adding embedded #jmolscript: select ({0:141});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Jonesia denitrificans
publication title	Structural and Functional Characterization of a Small Chitin-Active Lytic Polysaccharide Monooxygenase Domain of a Multi-Modular Chitinase from Jonesia Denitrificans. pubmed doi rcsb
molecule keywords	CHITINASE
total genus	42
structure length	142
sequence length	142
chains with identical sequence	B
ec nomenclature	ec 3.2.1.14: Chitinase.
pdb deposition date	2015-07-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03067	LPMO_10	Lytic polysaccharide mono-oxygenase, cellulose-degrading

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.50.50	Mainly Beta	Distorted Sandwich	Coagulation Factor XIII; Chain A, domain 1	chitin-binding protein cbp21	5aa7A00

4OY7A 4A02A 3UAMA 5AA7A 4OY6A 4ALTA 4ALCA 2BENA 2BEMA 2YOYA 5IJUA 5FJQA 2YOXA 2YOWA 4ALEA 2XWXA 5FTZA 4ALRA 4OY8A 4GBOA 4ALQA 4ALSA 2LHSA
chains in the Genus database with same CATH superfamily

5ACIA 4OY7A 4D7VA 3T5GB 2JHXA 5HNPA 2R5OA 2JHTA 3JUAA 1RHOA 5F2UA 2BEMA 4MAIA 1FSTA 5FJQA 2JHUA 3RBQA 1HH4D 4GOJC 1QVYA 5TARB 4JVBB 5L7KA 4JV6B 2JHYA 2JHVA 2JI0A 1GDFA 4JHPB 5HGUA 1KMTA 3UAMA 5AA7A 3L15A 4ALTA 2BENA 2YOYA 4QI8A 5EMWA 4LN0A 3GQQA 2YOXA 5HNOA 5DQEA 4FMRA 2JHSA 2JHWA 4F38B 5FTZA 2VTCA 1KSGB 4GBOA 4ALSA 5FOHA 5TB5B 3KYSA 1FSOA 5ACJA 1KSHB 2JHZA 1FT0A 4ALCA 4EISB 5E80A 5ACHA 4D7UA 4B5QA 5IJUA 4MAHA 1DOAB 5DQ8A 3ZUDA 2YOWA 2YETA 5E8FA 4EIRA 1FT3A 4ALRA 4ALQA 1KSJB 1DS6B 4GOKC 4EISA 4A02A 3T5IA 4OY6A 1AJWA 2BXWA 4RE1A 4JVFB 5ACGA 3EIIA 3EJAA 4ALEA 2XWXA 4OY8A 4JV8B 5ACFA 5EMVA 2LHSA
chains in the Genus database with same CATH topology

4OY7A 4A02A 3UAMA 5AA7A 4OY6A 4ALTA 4ALCA 2BENA 2BEMA 2YOYA 5IJUA 5FJQA 2YOXA 2YOWA 4ALEA 2XWXA 5FTZA 4ALRA 4OY8A 4GBOA 4ALQA 4ALSA 2LHSA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4OY7 A;  4A02 A;  3UAM A;  5AA7 A;  4OY6 A;  4ALT A;  4ALC A;  2BEN A;  2BEM A;  2YOY A;  5IJU A;  5FJQ A;  2YOX A;  2YOW A;  4ALE A;  2XWX A;  5FTZ A;  4ALR A;  4OY8 A;  4GBO A;  4ALQ A;  4ALS A;  2LHS A; 
#chains in the Genus database with same CATH topology
 5ACI A;  4OY7 A;  4D7V A;  3T5G B;  2JHX A;  5HNP A;  2R5O A;  2JHT A;  3JUA A;  1RHO A;  5F2U A;  2BEM A;  4MAI A;  1FST A;  5FJQ A;  2JHU A;  3RBQ A;  1HH4 D;  4GOJ C;  1QVY A;  5TAR B;  4JVB B;  5L7K A;  4JV6 B;  2JHY A;  2JHV A;  2JI0 A;  1GDF A;  4JHP B;  5HGU A;  1KMT A;  3UAM A;  5AA7 A;  3L15 A;  4ALT A;  2BEN A;  2YOY A;  4QI8 A;  5EMW A;  4LN0 A;  3GQQ A;  2YOX A;  5HNO A;  5DQE A;  4FMR A;  2JHS A;  2JHW A;  4F38 B;  5FTZ A;  2VTC A;  1KSG B;  4GBO A;  4ALS A;  5FOH A;  5TB5 B;  3KYS A;  1FSO A;  5ACJ A;  1KSH B;  2JHZ A;  1FT0 A;  4ALC A;  4EIS B;  5E80 A;  5ACH A;  4D7U A;  4B5Q A;  5IJU A;  4MAH A;  1DOA B;  5DQ8 A;  3ZUD A;  2YOW A;  2YET A;  5E8F A;  4EIR A;  1FT3 A;  4ALR A;  4ALQ A;  1KSJ B;  1DS6 B;  4GOK C;  4EIS A;  4A02 A;  3T5I A;  4OY6 A;  1AJW A;  2BXW A;  4RE1 A;  4JVF B;  5ACG A;  3EII A;  3EJA A;  4ALE A;  2XWX A;  4OY8 A;  4JV8 B;  5ACF A;  5EMV A;  2LHS A; 
#chains in the Genus database with same CATH homology
 4OY7 A;  4A02 A;  3UAM A;  5AA7 A;  4OY6 A;  4ALT A;  4ALC A;  2BEN A;  2BEM A;  2YOY A;  5IJU A;  5FJQ A;  2YOX A;  2YOW A;  4ALE A;  2XWX A;  5FTZ A;  4ALR A;  4OY8 A;  4GBO A;  4ALQ A;  4ALS A;  2LHS A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5AA7A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations