1CFA | Genus

Total Genus 14

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	14
sequence length	71
structure length	71
Chain Sequence	MLQKKIEEIAAKYKHSVVKKCCYDGASVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRANISHKDMC

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Immune system/inhibitor
source organism	Homo sapiens
publication title	Solution structure of a unique C5a semi-synthetic antagonist: implications in receptor binding. pubmed rcsb
molecule keywords	COMPLEMENT 5A SEMI-SYNTHETIC ANTAGONIST
total genus	14
structure length	71
sequence length	71
ec nomenclature
pdb deposition date	1996-09-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01821	ANATO	Anaphylotoxin-like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.91.20	Mainly Alpha	Up-down Bundle	Influenza Virus Matrix Protein; Chain A, domain 1	Anaphylotoxins (complement system)	1cfaA00

4P3BA 4HW5A 2A73B 4UU9C 3CU7A 4I6OA 1C5AA 2B39A 1KJSA 4HWJA 3KLSA 4P3AA 5B4PB 1CFAA 3HQBA 4P39A 4WB3A 4FXKB 5JPNB 3HQAA 4WB2A
chains in the Genus database with same CATH superfamily

4IQ4A 4P3BA 5CQEA 4HW5A 5JPMB 2A73B 4D9JA 4UU9C 3CU7A 4I6OA 1EA3A 1C5AA 2B39A 2Z16A 1AA7A 1KJSA 4HWJA 3KLSA 4P3AA 5B4PB 1CFAA 3HQBA 4P39A 4WB3A 4ITVA 4FXKB 4FXGB 3VDXA 4PUSA 3MD2A 5JPNB 3HQAA 4WB2A
chains in the Genus database with same CATH topology

4P3BA 4HW5A 2A73B 4UU9C 3CU7A 4I6OA 1C5AA 2B39A 1KJSA 4HWJA 3KLSA 4P3AA 5B4PB 1CFAA 3HQBA 4P39A 4WB3A 4FXKB 5JPNB 3HQAA 4WB2A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4P3B A;  4HW5 A;  2A73 B;  4UU9 C;  3CU7 A;  4I6O A;  1C5A A;  2B39 A;  1KJS A;  4HWJ A;  3KLS A;  4P3A A;  5B4P B;  1CFA A;  3HQB A;  4P39 A;  4WB3 A;  4FXK B;  5JPN B;  3HQA A;  4WB2 A; 
#chains in the Genus database with same CATH topology
 4IQ4 A;  4P3B A;  5CQE A;  4HW5 A;  5JPM B;  2A73 B;  4D9J A;  4UU9 C;  3CU7 A;  4I6O A;  1EA3 A;  1C5A A;  2B39 A;  2Z16 A;  1AA7 A;  1KJS A;  4HWJ A;  3KLS A;  4P3A A;  5B4P B;  1CFA A;  3HQB A;  4P39 A;  4WB3 A;  4ITV A;  4FXK B;  4FXG B;  3VDX A;  4PUS A;  3MD2 A;  5JPN B;  3HQA A;  4WB2 A; 
#chains in the Genus database with same CATH homology
 4P3B A;  4HW5 A;  2A73 B;  4UU9 C;  3CU7 A;  4I6O A;  1C5A A;  2B39 A;  1KJS A;  4HWJ A;  3KLS A;  4P3A A;  5B4P B;  1CFA A;  3HQB A;  4P39 A;  4WB3 A;  4FXK B;  5JPN B;  3HQA A;  4WB2 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1CFAA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations