1CSI | Genus

Total Genus 161

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	161
sequence length	435
structure length	435
Chain Sequence	STNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGIRFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTAGLEKLSAGG

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase(oxo-acid)
source organism	Gallus gallus
publication title	A very short hydrogen bond provides only moderate stabilization of an enzyme-inhibitor complex of citrate synthase. pubmed doi rcsb
molecule keywords	CITRATE SYNTHASE
total genus	161
structure length	435
sequence length	435
ec nomenclature	ec 2.3.3.1: Citrate (Si)-synthase.
pdb deposition date	1994-03-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00285	Citrate_synt	Citrate synthase, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.230.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450-Terp; domain 2	Cytochrome P450-Terp, domain 2	1csiA02
1.10.580.10	Mainly Alpha	Orthogonal Bundle	Citrate Synthase; domain 1	Citrate Synthase, domain 1	1csiA01

1VGPA 4JADA 3CSCA 4JAEA 4CTSA 3HWKA 4YBOA 2IBPA 1OWCA 1CSHA 1O7XA 4CSCA 2H12A 1AL6A 4G6BA 1IXEA 1AJ8A 2IFCA 3TQGA 2C6XA 5CSCA 5CTSA 1CSCA 4JAGA 1NXEA 1A59A 1CSSA 1CTSA 4TVMA 4XGHA 3O8JA 1NXGA 2P2WA 2CSCA 1CSIA 5CSCB 1OWBA 2CTSA 1IOMA 4E6YA 1VGMA 6CTSA 2R9EA 1AMZA 6CSCA 4JAFA 2R26A 3MSUA 1CSRA 3ENJA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1VGP A;  4JAD A;  3CSC A;  4JAE A;  4CTS A;  3HWK A;  4YBO A;  2IBP A;  1OWC A;  1CSH A;  1O7X A;  4CSC A;  2H12 A;  1AL6 A;  4G6B A;  1IXE A;  1AJ8 A;  2IFC A;  3TQG A;  2C6X A;  5CSC A;  5CTS A;  1CSC A;  4JAG A;  1NXE A;  1A59 A;  1CSS A;  1CTS A;  4TVM A;  4XGH A;  3O8J A;  1NXG A;  2P2W A;  2CSC A;  1CSI A;  5CSC B;  1OWB A;  2CTS A;  1IOM A;  4E6Y A;  1VGM A;  6CTS A;  2R9E A;  1AMZ A;  6CSC A;  4JAF A;  2R26 A;  3MSU A;  1CSR A;  3ENJ A; 
#chains in the Genus database with same CATH topology
 1VGP A;  4JAD A;  3CSC A;  4JAE A;  4CTS A;  3HWK A;  4YBO A;  2IBP A;  1OWC A;  1CSH A;  1O7X A;  4CSC A;  2H12 A;  1AL6 A;  4G6B A;  1IXE A;  1AJ8 A;  2IFC A;  3TQG A;  2C6X A;  5CSC A;  5CTS A;  1CSC A;  4JAG A;  1NXE A;  1A59 A;  1CSS A;  1CTS A;  4TVM A;  4XGH A;  3O8J A;  1NXG A;  2P2W A;  2CSC A;  1CSI A;  5CSC B;  1OWB A;  2CTS A;  1IOM A;  4E6Y A;  1VGM A;  6CTS A;  2R9E A;  1AMZ A;  6CSC A;  4JAF A;  2R26 A;  3MSU A;  1CSR A;  3ENJ A; 
#chains in the Genus database with same CATH homology
 1VGP A;  4JAD A;  3CSC A;  4JAE A;  4CTS A;  3HWK A;  4YBO A;  2IBP A;  1OWC A;  1CSH A;  1O7X A;  4CSC A;  2H12 A;  1AL6 A;  4G6B A;  1IXE A;  1AJ8 A;  2IFC A;  3TQG A;  2C6X A;  5CSC A;  5CTS A;  1CSC A;  4JAG A;  1NXE A;  1A59 A;  1CSS A;  1CTS A;  4TVM A;  4XGH A;  3O8J A;  1NXG A;  2P2W A;  2CSC A;  1CSI A;  5CSC B;  1OWB A;  2CTS A;  1IOM A;  4E6Y A;  1VGM A;  6CTS A;  2R9E A;  1AMZ A;  6CSC A;  4JAF A;  2R26 A;  3MSU A;  1CSR A;  3ENJ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1CSIA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations