1K8AV

Co-crystal structure of carbomycin a bound to the 50s ribosomal subunit of haloarcula marismortui
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
53
structure length
53
Chain Sequence
RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
publication title The structures of four macrolide antibiotics bound to the large ribosomal subunit.
pubmed doi rcsb
molecule keywords 23S RRNA
total genus 11
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2001-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
V PF01246 Ribosomal_L24e Ribosomal protein L24e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.170.20 Mainly Beta Roll Ribosomal Protein L24e; Chain: T; Ribosomal Protein L24e; Chain: T; 1k8aV00
1JJ2T 1K8AV 3CCEU 3I56U 1Q86V 1VQ9U 2QA4U 3CCMU 3I55U 1VQ6U 3G6EU 3CC4U 3CC2U 3OW2T 1YHQU 1W2BT 3G4SU 1VQNU 3CD6U 1VQ4U 3CXCT 1YJNU 2OTLU 1VQOU 1YI2U 1N8RV 2OTJU 1Q82V 1VQLU 1VQPU 1Q81V 1YJ9U 1VQ5U 1KC8V 1K73V 3CCSU 1QVGT 1YJWU 3CCQU 2QEXU 3CCUU 1M1KV 1KQST 1VQKU 3CC7U 1Q7YV 5AN9G 1KD1V 3CCRU 1VQMU 1VQ8U 1YIJU 1YITU 3G71U 3CCVU 3CPWT 1VQ7U 1NJIV 1K9MV 1M90V 3CCLU 3CMAU 1QVFT 3CCJU 3CMEU 1S72U
chains in the Genus database with same CATH superfamily
3CCEU 2QA4U 3G6EU 3CC4U 3CC2U 3CD6U 5H1SY 3G4SU 2QEZA 1YJNU 2JZ6A 1YI2U 1VQLU 1M1KV 5DM6U 3ABQA 1KD1V 1VQMU 3G71U 3CCVU 3CPWT 3J7ZX 3I55U 3OW2T 3ABRA 3CXCT 3ANYA 1Q82V 4UY8X 1Q81V 1VQ5U 1KC8V 1VQKU 3CC7U 3CCRU 1VQ8U 1YIJU 1YITU 1VQ7U 1S72U 1K8AV 1Q86V 1VQ9U 5MLCY 3ABOA 3AO0A 1VQ4U 3ABSA 1YJ9U 1JJDA 1QVGT 1YJWU 3CCUU 2QEXU 1KQST 1M90V 3CCLU 1QVFT 2OTLU 1JJ2T 3I56U 3CCMU 1VQ6U 1YHQU 1W2BT 1VQNU 1VQOU 1N8RV 2OTJU 1VQPU 1K73V 3CCSU 3CCQU 1Q7YV 5AN9G 1NJIV 1K9MV 3CMAU 3CCJU 3CMEU
chains in the Genus database with same CATH topology
1JJ2T 1K8AV 3CCEU 3I56U 1Q86V 1VQ9U 2QA4U 3CCMU 3I55U 1VQ6U 3G6EU 3CC4U 3CC2U 3OW2T 1YHQU 1W2BT 3G4SU 1VQNU 3CD6U 1VQ4U 3CXCT 1YJNU 2OTLU 1VQOU 1YI2U 1N8RV 2OTJU 1Q82V 1VQLU 1VQPU 1Q81V 1YJ9U 1VQ5U 1JJDA 1KC8V 1K73V 3CCSU 1QVGT 1YJWU 3CCQU 2QEXU 3CCUU 1M1KV 1KQST 1VQKU 3CC7U 1Q7YV 5AN9G 1KD1V 3CCRU 1VQMU 1VQ8U 1YIJU 1YITU 3G71U 3CCVU 3CPWT 1VQ7U 1NJIV 1K9MV 1M90V 3CCLU 3CMAU 1QVFT 3CCJU 3CMEU 1S72U
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JJ2 T;  1K8A V;  3CCE U;  3I56 U;  1Q86 V;  1VQ9 U;  2QA4 U;  3CCM U;  3I55 U;  1VQ6 U;  3G6E U;  3CC4 U;  3CC2 U;  3OW2 T;  1YHQ U;  1W2B T;  3G4S U;  1VQN U;  3CD6 U;  1VQ4 U;  3CXC T;  1YJN U;  2OTL U;  1VQO U;  1YI2 U;  1N8R V;  2OTJ U;  1Q82 V;  1VQL U;  1VQP U;  1Q81 V;  1YJ9 U;  1VQ5 U;  1KC8 V;  1K73 V;  3CCS U;  1QVG T;  1YJW U;  3CCQ U;  2QEX U;  3CCU U;  1M1K V;  1KQS T;  1VQK U;  3CC7 U;  1Q7Y V;  5AN9 G;  1KD1 V;  3CCR U;  1VQM U;  1VQ8 U;  1YIJ U;  1YIT U;  3G71 U;  3CCV U;  3CPW T;  1VQ7 U;  1NJI V;  1K9M V;  1M90 V;  3CCL U;  3CMA U;  1QVF T;  3CCJ U;  3CME U;  1S72 U; 
#chains in the Genus database with same CATH topology
 3CCE U;  2QA4 U;  3G6E U;  3CC4 U;  3CC2 U;  3CD6 U;  5H1S Y;  3G4S U;  2QEZ A;  1YJN U;  2JZ6 A;  1YI2 U;  1VQL U;  1M1K V;  5DM6 U;  3ABQ A;  1KD1 V;  1VQM U;  3G71 U;  3CCV U;  3CPW T;  3J7Z X;  3I55 U;  3OW2 T;  3ABR A;  3CXC T;  3ANY A;  1Q82 V;  4UY8 X;  1Q81 V;  1VQ5 U;  1KC8 V;  1VQK U;  3CC7 U;  3CCR U;  1VQ8 U;  1YIJ U;  1YIT U;  1VQ7 U;  1S72 U;  1K8A V;  1Q86 V;  1VQ9 U;  5MLC Y;  3ABO A;  3AO0 A;  1VQ4 U;  3ABS A;  1YJ9 U;  1JJD A;  1QVG T;  1YJW U;  3CCU U;  2QEX U;  1KQS T;  1M90 V;  3CCL U;  1QVF T;  2OTL U;  1JJ2 T;  3I56 U;  3CCM U;  1VQ6 U;  1YHQ U;  1W2B T;  1VQN U;  1VQO U;  1N8R V;  2OTJ U;  1VQP U;  1K73 V;  3CCS U;  3CCQ U;  1Q7Y V;  5AN9 G;  1NJI V;  1K9M V;  3CMA U;  3CCJ U;  3CME U; 
#chains in the Genus database with same CATH homology
 1JJ2 T;  1K8A V;  3CCE U;  3I56 U;  1Q86 V;  1VQ9 U;  2QA4 U;  3CCM U;  3I55 U;  1VQ6 U;  3G6E U;  3CC4 U;  3CC2 U;  3OW2 T;  1YHQ U;  1W2B T;  3G4S U;  1VQN U;  3CD6 U;  1VQ4 U;  3CXC T;  1YJN U;  2OTL U;  1VQO U;  1YI2 U;  1N8R V;  2OTJ U;  1Q82 V;  1VQL U;  1VQP U;  1Q81 V;  1YJ9 U;  1VQ5 U;  1JJD A;  1KC8 V;  1K73 V;  3CCS U;  1QVG T;  1YJW U;  3CCQ U;  2QEX U;  3CCU U;  1M1K V;  1KQS T;  1VQK U;  3CC7 U;  1Q7Y V;  5AN9 G;  1KD1 V;  3CCR U;  1VQM U;  1VQ8 U;  1YIJ U;  1YIT U;  3G71 U;  3CCV U;  3CPW T;  1VQ7 U;  1NJI V;  1K9M V;  1M90 V;  3CCL U;  3CMA U;  1QVF T;  3CCJ U;  3CME U;  1S72 U; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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