1VQOU

The structure of ccpmn bound to the large ribosomal subunit haloarcula marismortui
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
53
structure length
53
Chain Sequence
RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal rna
publication title Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction.
pubmed doi rcsb
total genus 11
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2004-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
U PF01246 Ribosomal_L24e Ribosomal protein L24e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.170.20 Mainly Beta Roll Ribosomal Protein L24e; Chain: T; Ribosomal Protein L24e; Chain: T; 1vqoU00
1VQLU 1K8AV 3I56U 3I55U 1KD1V 1NJIV 3CD6U 1VQ8U 3CCUU 1VQ7U 1N8RV 1YITU 3CCRU 3OW2T 1VQ6U 1VQ4U 1K73V 1VQOU 2QA4U 1YHQU 1KQST 3CCLU 1VQPU 3CCVU 3CXCT 3CMAU 5AN9G 1Q7YV 1VQNU 3CCSU 1S72U 1QVFT 1YJNU 3CCJU 1M90V 3CC2U 1Q82V 1VQ5U 1Q81V 1K9MV 1YI2U 1KC8V 3G4SU 3CC7U 1VQMU 2QEXU 1M1KV 1QVGT 1YJ9U 3CCEU 3CC4U 3CCMU 2OTJU 3G6EU 1JJ2T 2OTLU 3CPWT 1YJWU 3CMEU 1YIJU 3G71U 1VQKU 3CCQU 1W2BT 1Q86V 1VQ9U
chains in the Genus database with same CATH superfamily
1VQLU 1KD1V 3CCUU 3ABRA 5DM6U 1VQ4U 1YHQU 5AN9G 1S72U 3CC2U 1Q82V 2QEZA 5MLCY 1YI2U 1KC8V 1M1KV 1QVGT 1JJDA 2OTLU 3CPWT 3CMEU 3G71U 3CCQU 3CD6U 1N8RV 1VQ6U 1VQOU 1QVFT 1YJNU 3G4SU 3CCEU 3G6EU 1JJ2T 1YJWU 1YIJU 1W2BT 1VQ9U 3I56U 1NJIV 1VQ8U 1YITU 3OW2T 2QA4U 1VQPU 3CMAU 3CCSU 1M90V 3ANYA 1Q81V 3J7ZX 5H1SY 3CC7U 3AO0A 1YJ9U 4UY8X 1Q86V 1K8AV 3I55U 3ABSA 1VQ7U 3CCRU 1K73V 1KQST 3CCLU 3CCVU 3CXCT 2JZ6A 1VQNU 1Q7YV 3CCJU 1VQ5U 1K9MV 3ABOA 1VQMU 2QEXU 2OTJU 3CC4U 3CCMU 3ABQA 1VQKU
chains in the Genus database with same CATH topology
1VQLU 1K8AV 3I56U 3I55U 1KD1V 1NJIV 3CD6U 1VQ8U 3CCUU 1VQ7U 1N8RV 1YITU 3CCRU 3OW2T 1VQ6U 1VQ4U 1K73V 1VQOU 2QA4U 1YHQU 1KQST 3CCLU 1VQPU 3CCVU 3CXCT 3CMAU 5AN9G 1Q7YV 1VQNU 3CCSU 1S72U 1QVFT 1YJNU 3CCJU 1M90V 3CC2U 1Q82V 1VQ5U 1Q81V 1K9MV 1YI2U 1KC8V 3G4SU 3CC7U 1VQMU 2QEXU 1M1KV 1QVGT 1JJDA 1YJ9U 3CCEU 3CC4U 3CCMU 2OTJU 3G6EU 1JJ2T 2OTLU 3CPWT 1YJWU 3CMEU 1YIJU 3G71U 1VQKU 3CCQU 1W2BT 1Q86V 1VQ9U
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VQL U;  1K8A V;  3I56 U;  3I55 U;  1KD1 V;  1NJI V;  3CD6 U;  1VQ8 U;  3CCU U;  1VQ7 U;  1N8R V;  1YIT U;  3CCR U;  3OW2 T;  1VQ6 U;  1VQ4 U;  1K73 V;  1VQO U;  2QA4 U;  1YHQ U;  1KQS T;  3CCL U;  1VQP U;  3CCV U;  3CXC T;  3CMA U;  5AN9 G;  1Q7Y V;  1VQN U;  3CCS U;  1S72 U;  1QVF T;  1YJN U;  3CCJ U;  1M90 V;  3CC2 U;  1Q82 V;  1VQ5 U;  1Q81 V;  1K9M V;  1YI2 U;  1KC8 V;  3G4S U;  3CC7 U;  1VQM U;  2QEX U;  1M1K V;  1QVG T;  1YJ9 U;  3CCE U;  3CC4 U;  3CCM U;  2OTJ U;  3G6E U;  1JJ2 T;  2OTL U;  3CPW T;  1YJW U;  3CME U;  1YIJ U;  3G71 U;  1VQK U;  3CCQ U;  1W2B T;  1Q86 V;  1VQ9 U; 
#chains in the Genus database with same CATH topology
 1VQL U;  1KD1 V;  3CCU U;  3ABR A;  5DM6 U;  1VQ4 U;  1YHQ U;  5AN9 G;  1S72 U;  3CC2 U;  1Q82 V;  2QEZ A;  5MLC Y;  1YI2 U;  1KC8 V;  1M1K V;  1QVG T;  1JJD A;  2OTL U;  3CPW T;  3CME U;  3G71 U;  3CCQ U;  3CD6 U;  1N8R V;  1VQ6 U;  1VQO U;  1QVF T;  1YJN U;  3G4S U;  3CCE U;  3G6E U;  1JJ2 T;  1YJW U;  1YIJ U;  1W2B T;  1VQ9 U;  3I56 U;  1NJI V;  1VQ8 U;  1YIT U;  3OW2 T;  2QA4 U;  1VQP U;  3CMA U;  3CCS U;  1M90 V;  3ANY A;  1Q81 V;  3J7Z X;  5H1S Y;  3CC7 U;  3AO0 A;  1YJ9 U;  4UY8 X;  1Q86 V;  1K8A V;  3I55 U;  3ABS A;  1VQ7 U;  3CCR U;  1K73 V;  1KQS T;  3CCL U;  3CCV U;  3CXC T;  2JZ6 A;  1VQN U;  1Q7Y V;  3CCJ U;  1VQ5 U;  1K9M V;  3ABO A;  1VQM U;  2QEX U;  2OTJ U;  3CC4 U;  3CCM U;  3ABQ A;  1VQK U; 
#chains in the Genus database with same CATH homology
 1VQL U;  1K8A V;  3I56 U;  3I55 U;  1KD1 V;  1NJI V;  3CD6 U;  1VQ8 U;  3CCU U;  1VQ7 U;  1N8R V;  1YIT U;  3CCR U;  3OW2 T;  1VQ6 U;  1VQ4 U;  1K73 V;  1VQO U;  2QA4 U;  1YHQ U;  1KQS T;  3CCL U;  1VQP U;  3CCV U;  3CXC T;  3CMA U;  5AN9 G;  1Q7Y V;  1VQN U;  3CCS U;  1S72 U;  1QVF T;  1YJN U;  3CCJ U;  1M90 V;  3CC2 U;  1Q82 V;  1VQ5 U;  1Q81 V;  1K9M V;  1YI2 U;  1KC8 V;  3G4S U;  3CC7 U;  1VQM U;  2QEX U;  1M1K V;  1QVG T;  1JJD A;  1YJ9 U;  3CCE U;  3CC4 U;  3CCM U;  2OTJ U;  3G6E U;  1JJ2 T;  2OTL U;  3CPW T;  1YJW U;  3CME U;  1YIJ U;  3G71 U;  1VQK U;  3CCQ U;  1W2B T;  1Q86 V;  1VQ9 U; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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