1MMI | Genus

Total Genus 89

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	89
sequence length	366
structure length	366
Chain Sequence	MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 366 atoms

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366 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Escherichia coli
publication title	Flexibility revealed by the 1.85 A crystal structure of the beta sliding-clamp subunit of Escherichia coli DNA polymerase III. pubmed doi rcsb
molecule keywords	DNA polymerase III, beta chain
total genus	89
structure length	366
sequence length	366
chains with identical sequence	B
ec nomenclature	ec 2.7.7.7: DNA-directed DNA polymerase.
pdb deposition date	2002-09-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00712	DNA_pol3_beta	DNA polymerase III beta subunit, N-terminal domain
A	PF02767	DNA_pol3_beta_2	DNA polymerase III beta subunit, central domain
A	PF02768	DNA_pol3_beta_3	DNA polymerase III beta subunit, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	1mmiA02
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	1mmiA03
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	1mmiA01

4PNVA 4N95A 4K3QA 4PNUA 4OVHA 3QSBA 3PWEA 3D1EA 2AWAA 4N96A 4TRTA 5AGVA 4K3LA 4K74A 3L0WA 5AH2A 4MJRA 3QSBB 3F1VA 4TR6A 4K3KA 3L10A 4K3MA 4PNWA 4MJPA 4N94A 1MMIA 4OVFA 4N9AA 3Q4JA 5AGUA 5AH4A 3Q4KA 3D1GA 4K3PA 1JQLA 1OK7A 5FRQA 3Q4LA 4N97A 1JQJA 1UNNA 4MJQA 5FVEA 2XURA 3RB9A 4K3OA 3D1FA 4K3SA 4S3IA 4OVGA 4N99A 1VPKA 3BEPA 3P16A 3L0XA 4RKIA 4TR7A 4N98A 4TR8A 2POLA 3T0PA 2AVTA 3PGEB 4TSZA 4K3RA
chains in the Genus database with same CATH superfamily

4PNVA 4N95A 4K3QA 4PNUA 4OVHA 3QSBA 3PWEA 3D1EA 2AWAA 4N96A 4TRTA 5AGVA 4K3LA 4K74A 3L0WA 5AH2A 4MJRA 3QSBB 3F1VA 4TR6A 4K3KA 3L10A 4K3MA 3L0WB 4PNWA 4MJPA 4N94A 1MMIA 4OVFA 3L10B 3Q4JA 4N9AA 5AGUA 5AH4A 3Q4KA 3D1GA 4K3RA 1JQLA 1OK7A 4K3PA 5FRQA 3Q4LA 4N97A 1JQJA 1UNNA 4MJQA 5FVEA 2XURA 3RB9A 4K3OA 3D1FA 4K3SA 4S3IA 4OVGA 4N99A 1VPKA 3BEPA 3P16A 3PGEA 3L0XA 4RKIA 4TR7A 4N98A 4TR8A 2POLA 3T0PA 2AVTA 3PGEB 4TSZA 3L0XB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4PNV A;  4N95 A;  4K3Q A;  4PNU A;  4OVH A;  3QSB A;  3PWE A;  3D1E A;  2AWA A;  4N96 A;  4TRT A;  5AGV A;  4K3L A;  4K74 A;  3L0W A;  5AH2 A;  4MJR A;  3QSB B;  3F1V A;  4TR6 A;  4K3K A;  3L10 A;  4K3M A;  4PNW A;  4MJP A;  4N94 A;  1MMI A;  4OVF A;  4N9A A;  3Q4J A;  5AGU A;  5AH4 A;  3Q4K A;  3D1G A;  4K3P A;  1JQL A;  1OK7 A;  5FRQ A;  3Q4L A;  4N97 A;  1JQJ A;  1UNN A;  4MJQ A;  5FVE A;  2XUR A;  3RB9 A;  4K3O A;  3D1F A;  4K3S A;  4S3I A;  4OVG A;  4N99 A;  1VPK A;  3BEP A;  3P16 A;  3L0X A;  4RKI A;  4TR7 A;  4N98 A;  4TR8 A;  2POL A;  3T0P A;  2AVT A;  3PGE B;  4TSZ A;  4K3R A; 
#chains in the Genus database with same CATH topology
 4PNV A;  4N95 A;  4K3Q A;  4PNU A;  4OVH A;  3QSB A;  3PWE A;  3D1E A;  2AWA A;  4N96 A;  4TRT A;  5AGV A;  4K3L A;  4K74 A;  3L0W A;  5AH2 A;  4MJR A;  3QSB B;  3F1V A;  4TR6 A;  4K3K A;  3L10 A;  4K3M A;  3L0W B;  4PNW A;  4MJP A;  4N94 A;  1MMI A;  4OVF A;  3L10 B;  3Q4J A;  4N9A A;  5AGU A;  5AH4 A;  3Q4K A;  3D1G A;  4K3R A;  1JQL A;  1OK7 A;  4K3P A;  5FRQ A;  3Q4L A;  4N97 A;  1JQJ A;  1UNN A;  4MJQ A;  5FVE A;  2XUR A;  3RB9 A;  4K3O A;  3D1F A;  4K3S A;  4S3I A;  4OVG A;  4N99 A;  1VPK A;  3BEP A;  3P16 A;  3PGE A;  3L0X A;  4RKI A;  4TR7 A;  4N98 A;  4TR8 A;  2POL A;  3T0P A;  2AVT A;  3PGE B;  4TSZ A;  3L0X B; 
#chains in the Genus database with same CATH homology
 4PNV A;  4N95 A;  4K3Q A;  4PNU A;  4OVH A;  3QSB A;  3PWE A;  3D1E A;  2AWA A;  4N96 A;  4TRT A;  5AGV A;  4K3L A;  4K74 A;  3L0W A;  5AH2 A;  4MJR A;  3QSB B;  3F1V A;  4TR6 A;  4K3K A;  3L10 A;  4K3M A;  4PNW A;  4MJP A;  4N94 A;  1MMI A;  4OVF A;  4N9A A;  3Q4J A;  5AGU A;  5AH4 A;  3Q4K A;  3D1G A;  4K3P A;  1JQL A;  1OK7 A;  5FRQ A;  3Q4L A;  4N97 A;  1JQJ A;  1UNN A;  4MJQ A;  5FVE A;  2XUR A;  3RB9 A;  4K3O A;  3D1F A;  4K3S A;  4S3I A;  4OVG A;  4N99 A;  1VPK A;  3BEP A;  3P16 A;  3L0X A;  4RKI A;  4TR7 A;  4N98 A;  4TR8 A;  2POL A;  3T0P A;  2AVT A;  3PGE B;  4TSZ A;  4K3R A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1MMIA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations