1OK7 | Genus

Total Genus 91

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	91
sequence length	366
structure length	366
Chain Sequence	MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Escherichia coli
publication title	Structural and Biochemical Analysis of Sliding Clamp/Ligand Interactions Suggest a Competition between Replicative and Translesion DNA Polymerases pubmed doi rcsb
molecule keywords	DNA POLYMERASE III
total genus	91
structure length	366
sequence length	366
chains with identical sequence	B
ec nomenclature
pdb deposition date	2003-07-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00712	DNA_pol3_beta	DNA polymerase III beta subunit, N-terminal domain
A	PF02767	DNA_pol3_beta_2	DNA polymerase III beta subunit, central domain
A	PF02768	DNA_pol3_beta_3	DNA polymerase III beta subunit, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	1ok7A02
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	1ok7A03
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	1ok7A01

5FVEA 4MJQA 2AWAA 3P16A 4N9AA 4S3IA 3QSBB 4TR6A 3D1FA 3F1VA 4K3OA 5AGUA 4K3PA 3L0WA 3PWEA 5AH2A 1MMIA 2XURA 1OK7A 3PGEB 4OVFA 4PNWA 3D1EA 4TR7A 1JQLA 3L0XA 3Q4KA 3BEPA 4N98A 4N94A 4MJPA 4RKIA 4K3QA 3QSBA 1UNNA 4K3RA 4K3MA 4N97A 1JQJA 4MJRA 3D1GA 4TRTA 2AVTA 4K3LA 4K3SA 4PNUA 3Q4JA 5AH4A 5FRQA 3RB9A 4PNVA 3Q4LA 4N99A 3T0PA 1VPKA 4K3KA 4K74A 4OVGA 4TR8A 4N95A 4TSZA 4OVHA 5AGVA 4N96A 2POLA 3L10A
chains in the Genus database with same CATH superfamily

5FVEA 4MJQA 2AWAA 3P16A 4N9AA 4S3IA 3QSBB 4TR6A 3D1FA 3F1VA 4K3OA 5AGUA 4K3PA 3L0WA 3PWEA 5AH2A 1MMIA 2XURA 1OK7A 3PGEB 4OVFA 4PNWA 3D1EA 4TR7A 1JQLA 3L0XA 3Q4KA 3BEPA 4N98A 4N94A 4MJPA 4RKIA 4K3QA 3QSBA 1UNNA 4K3RA 4K3MA 4N97A 3L10B 1JQJA 3PGEA 3D1GA 4MJRA 2AVTA 4K3LA 4K3SA 4PNUA 3Q4JA 4TRTA 5AH4A 5FRQA 3RB9A 4PNVA 3Q4LA 4N99A 3L0WB 3T0PA 1VPKA 4K3KA 4K74A 4OVGA 4TR8A 4N95A 4TSZA 4OVHA 3L0XB 5AGVA 4N96A 2POLA 3L10A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5FVE A;  4MJQ A;  2AWA A;  3P16 A;  4N9A A;  4S3I A;  3QSB B;  4TR6 A;  3D1F A;  3F1V A;  4K3O A;  5AGU A;  4K3P A;  3L0W A;  3PWE A;  5AH2 A;  1MMI A;  2XUR A;  1OK7 A;  3PGE B;  4OVF A;  4PNW A;  3D1E A;  4TR7 A;  1JQL A;  3L0X A;  3Q4K A;  3BEP A;  4N98 A;  4N94 A;  4MJP A;  4RKI A;  4K3Q A;  3QSB A;  1UNN A;  4K3R A;  4K3M A;  4N97 A;  1JQJ A;  4MJR A;  3D1G A;  4TRT A;  2AVT A;  4K3L A;  4K3S A;  4PNU A;  3Q4J A;  5AH4 A;  5FRQ A;  3RB9 A;  4PNV A;  3Q4L A;  4N99 A;  3T0P A;  1VPK A;  4K3K A;  4K74 A;  4OVG A;  4TR8 A;  4N95 A;  4TSZ A;  4OVH A;  5AGV A;  4N96 A;  2POL A;  3L10 A; 
#chains in the Genus database with same CATH topology
 5FVE A;  4MJQ A;  2AWA A;  3P16 A;  4N9A A;  4S3I A;  3QSB B;  4TR6 A;  3D1F A;  3F1V A;  4K3O A;  5AGU A;  4K3P A;  3L0W A;  3PWE A;  5AH2 A;  1MMI A;  2XUR A;  1OK7 A;  3PGE B;  4OVF A;  4PNW A;  3D1E A;  4TR7 A;  1JQL A;  3L0X A;  3Q4K A;  3BEP A;  4N98 A;  4N94 A;  4MJP A;  4RKI A;  4K3Q A;  3QSB A;  1UNN A;  4K3R A;  4K3M A;  4N97 A;  3L10 B;  1JQJ A;  3PGE A;  3D1G A;  4MJR A;  2AVT A;  4K3L A;  4K3S A;  4PNU A;  3Q4J A;  4TRT A;  5AH4 A;  5FRQ A;  3RB9 A;  4PNV A;  3Q4L A;  4N99 A;  3L0W B;  3T0P A;  1VPK A;  4K3K A;  4K74 A;  4OVG A;  4TR8 A;  4N95 A;  4TSZ A;  4OVH A;  3L0X B;  5AGV A;  4N96 A;  2POL A;  3L10 A; 
#chains in the Genus database with same CATH homology
 5FVE A;  4MJQ A;  2AWA A;  3P16 A;  4N9A A;  4S3I A;  3QSB B;  4TR6 A;  3D1F A;  3F1V A;  4K3O A;  5AGU A;  4K3P A;  3L0W A;  3PWE A;  5AH2 A;  1MMI A;  2XUR A;  1OK7 A;  3PGE B;  4OVF A;  4PNW A;  3D1E A;  4TR7 A;  1JQL A;  3L0X A;  3Q4K A;  3BEP A;  4N98 A;  4N94 A;  4MJP A;  4RKI A;  4K3Q A;  3QSB A;  1UNN A;  4K3R A;  4K3M A;  4N97 A;  1JQJ A;  4MJR A;  3D1G A;  4TRT A;  2AVT A;  4K3L A;  4K3S A;  4PNU A;  3Q4J A;  5AH4 A;  5FRQ A;  3RB9 A;  4PNV A;  3Q4L A;  4N99 A;  3T0P A;  1VPK A;  4K3K A;  4K74 A;  4OVG A;  4TR8 A;  4N95 A;  4TSZ A;  4OVH A;  5AGV A;  4N96 A;  2POL A;  3L10 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1OK7A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations