1OK7 | Genus

Total Genus 91

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	91
sequence length	366
structure length	366
Chain Sequence	MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Escherichia coli
publication title	Structural and Biochemical Analysis of Sliding Clamp/Ligand Interactions Suggest a Competition between Replicative and Translesion DNA Polymerases pubmed doi rcsb
molecule keywords	DNA POLYMERASE III
total genus	91
structure length	366
sequence length	366
chains with identical sequence	B
ec nomenclature
pdb deposition date	2003-07-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00712	DNA_pol3_beta	DNA polymerase III beta subunit, N-terminal domain
A	PF02767	DNA_pol3_beta_2	DNA polymerase III beta subunit, central domain
A	PF02768	DNA_pol3_beta_3	DNA polymerase III beta subunit, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	1ok7A02
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	1ok7A03
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	1ok7A01

1JQLA 3L10A 3P16A 3RB9A 3PGEB 3QSBA 2XURA 3Q4KA 3Q4LA 4K3OA 4N94A 3D1FA 1MMIA 4N99A 4N96A 4TR6A 4RKIA 4MJPA 3BEPA 4TR7A 5AGVA 3L0XA 1OK7A 4PNWA 2POLA 5AGUA 4TR8A 4N98A 3L0WA 4K3RA 4N9AA 4TSZA 3PWEA 4PNVA 4OVFA 4OVGA 4MJRA 3D1EA 4TRTA 5AH4A 1JQJA 3D1GA 4N95A 4MJQA 4N97A 5FVEA 4K74A 4K3MA 4K3PA 2AWAA 3Q4JA 4S3IA 5AH2A 4K3KA 4K3LA 4OVHA 4K3SA 4K3QA 3T0PA 1VPKA 3QSBB 2AVTA 5FRQA 1UNNA 3F1VA 4PNUA
chains in the Genus database with same CATH superfamily

1JQLA 3L10A 3P16A 3RB9A 3PGEB 3QSBA 2XURA 3Q4KA 3Q4LA 4K3OA 4N94A 3D1FA 1MMIA 3L0XB 4N99A 4N96A 4TR6A 4RKIA 4MJPA 3BEPA 4TR7A 3L0WB 5AGVA 3L0XA 3PGEA 1OK7A 4PNWA 2POLA 5AGUA 4TR8A 4N98A 3L0WA 4K3RA 4N9AA 4TSZA 3PWEA 4PNVA 4OVFA 4OVGA 4MJRA 3D1EA 4TRTA 5AH4A 1JQJA 3D1GA 4N95A 4MJQA 4N97A 5FVEA 4K74A 4K3MA 4K3PA 2AWAA 3Q4JA 4S3IA 5AH2A 4K3KA 4K3LA 3L10B 4K3SA 4K3QA 4OVHA 1VPKA 3T0PA 3QSBB 2AVTA 5FRQA 1UNNA 3F1VA 4PNUA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1JQL A;  3L10 A;  3P16 A;  3RB9 A;  3PGE B;  3QSB A;  2XUR A;  3Q4K A;  3Q4L A;  4K3O A;  4N94 A;  3D1F A;  1MMI A;  4N99 A;  4N96 A;  4TR6 A;  4RKI A;  4MJP A;  3BEP A;  4TR7 A;  5AGV A;  3L0X A;  1OK7 A;  4PNW A;  2POL A;  5AGU A;  4TR8 A;  4N98 A;  3L0W A;  4K3R A;  4N9A A;  4TSZ A;  3PWE A;  4PNV A;  4OVF A;  4OVG A;  4MJR A;  3D1E A;  4TRT A;  5AH4 A;  1JQJ A;  3D1G A;  4N95 A;  4MJQ A;  4N97 A;  5FVE A;  4K74 A;  4K3M A;  4K3P A;  2AWA A;  3Q4J A;  4S3I A;  5AH2 A;  4K3K A;  4K3L A;  4OVH A;  4K3S A;  4K3Q A;  3T0P A;  1VPK A;  3QSB B;  2AVT A;  5FRQ A;  1UNN A;  3F1V A;  4PNU A; 
#chains in the Genus database with same CATH topology
 1JQL A;  3L10 A;  3P16 A;  3RB9 A;  3PGE B;  3QSB A;  2XUR A;  3Q4K A;  3Q4L A;  4K3O A;  4N94 A;  3D1F A;  1MMI A;  3L0X B;  4N99 A;  4N96 A;  4TR6 A;  4RKI A;  4MJP A;  3BEP A;  4TR7 A;  3L0W B;  5AGV A;  3L0X A;  3PGE A;  1OK7 A;  4PNW A;  2POL A;  5AGU A;  4TR8 A;  4N98 A;  3L0W A;  4K3R A;  4N9A A;  4TSZ A;  3PWE A;  4PNV A;  4OVF A;  4OVG A;  4MJR A;  3D1E A;  4TRT A;  5AH4 A;  1JQJ A;  3D1G A;  4N95 A;  4MJQ A;  4N97 A;  5FVE A;  4K74 A;  4K3M A;  4K3P A;  2AWA A;  3Q4J A;  4S3I A;  5AH2 A;  4K3K A;  4K3L A;  3L10 B;  4K3S A;  4K3Q A;  4OVH A;  1VPK A;  3T0P A;  3QSB B;  2AVT A;  5FRQ A;  1UNN A;  3F1V A;  4PNU A; 
#chains in the Genus database with same CATH homology
 1JQL A;  3L10 A;  3P16 A;  3RB9 A;  3PGE B;  3QSB A;  2XUR A;  3Q4K A;  3Q4L A;  4K3O A;  4N94 A;  3D1F A;  1MMI A;  4N99 A;  4N96 A;  4TR6 A;  4RKI A;  4MJP A;  3BEP A;  4TR7 A;  5AGV A;  3L0X A;  1OK7 A;  4PNW A;  2POL A;  5AGU A;  4TR8 A;  4N98 A;  3L0W A;  4K3R A;  4N9A A;  4TSZ A;  3PWE A;  4PNV A;  4OVF A;  4OVG A;  4MJR A;  3D1E A;  4TRT A;  5AH4 A;  1JQJ A;  3D1G A;  4N95 A;  4MJQ A;  4N97 A;  5FVE A;  4K74 A;  4K3M A;  4K3P A;  2AWA A;  3Q4J A;  4S3I A;  5AH2 A;  4K3K A;  4K3L A;  4OVH A;  4K3S A;  4K3Q A;  3T0P A;  1VPK A;  3QSB B;  2AVT A;  5FRQ A;  1UNN A;  3F1V A;  4PNU A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1OK7A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations