The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
40
|
sequence length |
107
|
structure length |
107
|
Chain Sequence |
AMARMSPADKRKLLDELRSIYRTIVLEYFNTDAKVNERIDEFVSKAFFADISVSQVLEIHVELMDTFSKQLKLEGRSEDILLDYRLTLIDVIAHLCEMYRRSIPREV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
NMR structure of the KaiC-interacting C-terminal domain of KaiA, a circadian clock protein: Implications for KaiA-KaiC interaction
pubmed doi rcsb |
| molecule tags |
Circadian clock protein
|
| source organism |
Thermosynechococcus elongatus
|
| molecule keywords |
Circadian clock protein KaiA homolog
|
| total genus |
40
|
| structure length |
107
|
| sequence length |
107
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2003-08-13 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 | KaiA/RbsU domain |
#chains in the Genus database with same CATH superfamily 1Q6A A; 2J6Y A; 1R8J A; 1W53 A; 1SV1 A; 1Q6B A; 1R5Q A; 2J70 A; 4G86 A; 1V2Z A; 5C5E A; 1SUY A; 2J6Z A; #chains in the Genus database with same CATH topology 2I2X B; 3L9T A; 3IV9 A; 2J70 A; 1V2Z A; 3BJD A; 1K98 A; 5C5E A; 1BMT A; 4M0M A; 3WHP A; 1Q6B A; 1K7Y A; 3BUL A; 1QTE A; 1SLY A; 2J6Y A; 1QSA A; 3EZX A; 4HEH A; 1SV1 A; 2PBI A; 3H20 A; 4JGI A; 1UTU A; 5C8D A; 4X8Q A; 2FMM E; 1Q6A A; 1R8J A; 1UZ3 A; 3IVA A; 1W53 A; 4HH3 C; 1R5Q A; 4G86 A; 3M1M A; 1SUY A; 2J6Z A; #chains in the Genus database with same CATH homology 1Q6A A; 2J6Y A; 1R8J A; 1W53 A; 1SV1 A; 1Q6B A; 1R5Q A; 2J70 A; 4G86 A; 1V2Z A; 5C5E A; 1SUY A; 2J6Z A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
