1UNN | Genus

Total Genus 89

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	89
sequence length	366
structure length	366
Chain Sequence	MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 366 atoms

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366 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Beta-clamp
source organism	Escherichia coli
publication title	Structural Basis for Recruitment of Translesion DNA Polymerase Pol Iv/Dinb to the Beta-Clamp pubmed doi rcsb
molecule keywords	DNA POLYMERASE III BETA SUBUNIT
total genus	89
structure length	366
sequence length	366
chains with identical sequence	B
ec nomenclature
pdb deposition date	2003-09-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00712	DNA_pol3_beta	DNA polymerase III beta subunit, N-terminal domain
A	PF02767	DNA_pol3_beta_2	DNA polymerase III beta subunit, central domain
A	PF02768	DNA_pol3_beta_3	DNA polymerase III beta subunit, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	1unnA02
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	1unnA03
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	1unnA01

4K3QA 4N94A 3L0XA 3PGEB 4N96A 4PNVA 4N97A 3P16A 4TR6A 3D1FA 5FRQA 2XURA 3T0PA 3Q4KA 4K3KA 4K3MA 4MJRA 4OVGA 1JQJA 4N99A 4OVHA 4K3LA 5FVEA 1JQLA 3D1EA 4TR8A 5AGVA 3BEPA 4RKIA 4N98A 4PNWA 4TSZA 3QSBB 1UNNA 4K3RA 3QSBA 3Q4JA 4N95A 3PWEA 4K74A 4TR7A 4MJQA 3L10A 3RB9A 3L0WA 4S3IA 3F1VA 5AH4A 4N9AA 4PNUA 5AGUA 4K3PA 1VPKA 2AVTA 3D1GA 4K3SA 4TRTA 1MMIA 2AWAA 4OVFA 1OK7A 2POLA 4K3OA 4MJPA 3Q4LA 5AH2A
chains in the Genus database with same CATH superfamily

4K3QA 4N94A 3L0XA 3PGEB 4N96A 4PNVA 3PGEA 4N97A 3P16A 4TR6A 3D1FA 5FRQA 2XURA 3T0PA 3Q4KA 4K3KA 4K3MA 4MJRA 4OVGA 1JQJA 4N99A 4OVHA 4K3LA 5FVEA 1JQLA 3D1EA 4TR8A 5AGVA 5AH2A 3BEPA 4RKIA 4N98A 4PNWA 4TSZA 3QSBB 1UNNA 4K3RA 3QSBA 3Q4JA 4N95A 3PWEA 3L10B 4K74A 4TR7A 4MJQA 3L10A 3L0WB 3RB9A 3L0WA 4S3IA 3F1VA 5AH4A 4N9AA 4PNUA 5AGUA 4K3PA 1VPKA 2AVTA 3D1GA 4K3SA 4TRTA 1MMIA 2AWAA 4OVFA 1OK7A 2POLA 4K3OA 4MJPA 3Q4LA 3L0XB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4K3Q A;  4N94 A;  3L0X A;  3PGE B;  4N96 A;  4PNV A;  4N97 A;  3P16 A;  4TR6 A;  3D1F A;  5FRQ A;  2XUR A;  3T0P A;  3Q4K A;  4K3K A;  4K3M A;  4MJR A;  4OVG A;  1JQJ A;  4N99 A;  4OVH A;  4K3L A;  5FVE A;  1JQL A;  3D1E A;  4TR8 A;  5AGV A;  3BEP A;  4RKI A;  4N98 A;  4PNW A;  4TSZ A;  3QSB B;  1UNN A;  4K3R A;  3QSB A;  3Q4J A;  4N95 A;  3PWE A;  4K74 A;  4TR7 A;  4MJQ A;  3L10 A;  3RB9 A;  3L0W A;  4S3I A;  3F1V A;  5AH4 A;  4N9A A;  4PNU A;  5AGU A;  4K3P A;  1VPK A;  2AVT A;  3D1G A;  4K3S A;  4TRT A;  1MMI A;  2AWA A;  4OVF A;  1OK7 A;  2POL A;  4K3O A;  4MJP A;  3Q4L A;  5AH2 A; 
#chains in the Genus database with same CATH topology
 4K3Q A;  4N94 A;  3L0X A;  3PGE B;  4N96 A;  4PNV A;  3PGE A;  4N97 A;  3P16 A;  4TR6 A;  3D1F A;  5FRQ A;  2XUR A;  3T0P A;  3Q4K A;  4K3K A;  4K3M A;  4MJR A;  4OVG A;  1JQJ A;  4N99 A;  4OVH A;  4K3L A;  5FVE A;  1JQL A;  3D1E A;  4TR8 A;  5AGV A;  5AH2 A;  3BEP A;  4RKI A;  4N98 A;  4PNW A;  4TSZ A;  3QSB B;  1UNN A;  4K3R A;  3QSB A;  3Q4J A;  4N95 A;  3PWE A;  3L10 B;  4K74 A;  4TR7 A;  4MJQ A;  3L10 A;  3L0W B;  3RB9 A;  3L0W A;  4S3I A;  3F1V A;  5AH4 A;  4N9A A;  4PNU A;  5AGU A;  4K3P A;  1VPK A;  2AVT A;  3D1G A;  4K3S A;  4TRT A;  1MMI A;  2AWA A;  4OVF A;  1OK7 A;  2POL A;  4K3O A;  4MJP A;  3Q4L A;  3L0X B; 
#chains in the Genus database with same CATH homology
 4K3Q A;  4N94 A;  3L0X A;  3PGE B;  4N96 A;  4PNV A;  4N97 A;  3P16 A;  4TR6 A;  3D1F A;  5FRQ A;  2XUR A;  3T0P A;  3Q4K A;  4K3K A;  4K3M A;  4MJR A;  4OVG A;  1JQJ A;  4N99 A;  4OVH A;  4K3L A;  5FVE A;  1JQL A;  3D1E A;  4TR8 A;  5AGV A;  3BEP A;  4RKI A;  4N98 A;  4PNW A;  4TSZ A;  3QSB B;  1UNN A;  4K3R A;  3QSB A;  3Q4J A;  4N95 A;  3PWE A;  4K74 A;  4TR7 A;  4MJQ A;  3L10 A;  3RB9 A;  3L0W A;  4S3I A;  3F1V A;  5AH4 A;  4N9A A;  4PNU A;  5AGU A;  4K3P A;  1VPK A;  2AVT A;  3D1G A;  4K3S A;  4TRT A;  1MMI A;  2AWA A;  4OVF A;  1OK7 A;  2POL A;  4K3O A;  4MJP A;  3Q4L A;  5AH2 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1UNNA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations