1VQ4 | Genus

Total Genus 11

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	11
sequence length	53
structure length	53
Chain Sequence	RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 53 atoms

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53 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction. pubmed doi rcsb
molecule keywords	23S ribosomal rna
total genus	11
structure length	53
sequence length	53
ec nomenclature
pdb deposition date	2004-12-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
U	PF01246	Ribosomal_L24e	Ribosomal protein L24e

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.170.20	Mainly Beta	Roll	Ribosomal Protein L24e; Chain: T;	Ribosomal Protein L24e; Chain: T;	1vq4U00

3CPWT 1YIJU 1YJWU 1VQ8U 3CD6U 1Q82V 1KQST 3I56U 1K8AV 1VQOU 2QEXU 3G4SU 3CMAU 3OW2T 1VQLU 1VQ6U 1VQPU 1VQ4U 1VQ7U 1Q81V 2QA4U 1QVGT 1VQ5U 1KD1V 3CC7U 2OTJU 3CCLU 1K73V 1VQKU 3CCUU 3CCEU 1YJNU 3CC4U 1W2BT 1Q7YV 1YITU 1JJ2T 3CMEU 1VQ9U 3CC2U 3G71U 1QVFT 3CCJU 1Q86V 1KC8V 3CXCT 3CCVU 1YHQU 2OTLU 1N8RV 1VQNU 5AN9G 3CCRU 1YI2U 1S72U 1NJIV 3I55U 1K9MV 3CCQU 3CCMU 1YJ9U 3G6EU 1M1KV 3CCSU 1VQMU 1M90V
chains in the Genus database with same CATH superfamily

1YIJU 1VQ8U 1Q82V 2JZ6A 2QEXU 3OW2T 1JJDA 1VQLU 3CCUU 1YJNU 5DM6U 1Q7YV 1YITU 1QVFT 1Q86V 1KC8V 3CCVU 5AN9G 1YI2U 3CCSU 2QEZA 3CD6U 1K8AV 3G4SU 3ANYA 4UY8X 1VQPU 1VQ4U 3ABQA 2OTJU 3CCLU 3ABRA 1VQKU 3CCEU 3ABSA 3CMEU 3AO0A 2OTLU 3CCRU 1NJIV 3I55U 1M1KV 3G6EU 1M90V 3ABOA 3CPWT 1YJWU 3I56U 1VQ6U 1KD1V 3CC7U 1VQ9U 3CC2U 3G71U 3CXCT 1VQNU 1K9MV 1VQMU 5MLCY 1KQST 1VQOU 3CMAU 1VQ7U 1Q81V 2QA4U 1QVGT 1VQ5U 1K73V 3CC4U 1W2BT 3J7ZX 1JJ2T 3CCJU 1YHQU 1N8RV 5H1SY 1S72U 3CCQU 3CCMU 1YJ9U
chains in the Genus database with same CATH topology

3CPWT 1YIJU 1YJWU 1VQ8U 3CD6U 1Q82V 1KQST 3I56U 1K8AV 1VQOU 2QEXU 3G4SU 3CMAU 1JJDA 3OW2T 1VQLU 1VQPU 1VQ4U 1VQ7U 1Q81V 1VQ6U 2QA4U 1QVGT 1VQ5U 1KD1V 3CC7U 2OTJU 3CCLU 1K73V 1VQKU 3CCUU 3CCEU 1YJNU 3CC4U 1W2BT 1Q7YV 1YITU 1JJ2T 3CMEU 1VQ9U 3CC2U 3G71U 1QVFT 3CCJU 1Q86V 1KC8V 3CXCT 3CCVU 1YHQU 2OTLU 1N8RV 1VQNU 5AN9G 3CCRU 1YI2U 1S72U 1NJIV 3I55U 1K9MV 3CCQU 3CCMU 1YJ9U 3G6EU 1M1KV 3CCSU 1VQMU 1M90V
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3CPW T;  1YIJ U;  1YJW U;  1VQ8 U;  3CD6 U;  1Q82 V;  1KQS T;  3I56 U;  1K8A V;  1VQO U;  2QEX U;  3G4S U;  3CMA U;  3OW2 T;  1VQL U;  1VQ6 U;  1VQP U;  1VQ4 U;  1VQ7 U;  1Q81 V;  2QA4 U;  1QVG T;  1VQ5 U;  1KD1 V;  3CC7 U;  2OTJ U;  3CCL U;  1K73 V;  1VQK U;  3CCU U;  3CCE U;  1YJN U;  3CC4 U;  1W2B T;  1Q7Y V;  1YIT U;  1JJ2 T;  3CME U;  1VQ9 U;  3CC2 U;  3G71 U;  1QVF T;  3CCJ U;  1Q86 V;  1KC8 V;  3CXC T;  3CCV U;  1YHQ U;  2OTL U;  1N8R V;  1VQN U;  5AN9 G;  3CCR U;  1YI2 U;  1S72 U;  1NJI V;  3I55 U;  1K9M V;  3CCQ U;  3CCM U;  1YJ9 U;  3G6E U;  1M1K V;  3CCS U;  1VQM U;  1M90 V; 
#chains in the Genus database with same CATH topology
 1YIJ U;  1VQ8 U;  1Q82 V;  2JZ6 A;  2QEX U;  3OW2 T;  1JJD A;  1VQL U;  3CCU U;  1YJN U;  5DM6 U;  1Q7Y V;  1YIT U;  1QVF T;  1Q86 V;  1KC8 V;  3CCV U;  5AN9 G;  1YI2 U;  3CCS U;  2QEZ A;  3CD6 U;  1K8A V;  3G4S U;  3ANY A;  4UY8 X;  1VQP U;  1VQ4 U;  3ABQ A;  2OTJ U;  3CCL U;  3ABR A;  1VQK U;  3CCE U;  3ABS A;  3CME U;  3AO0 A;  2OTL U;  3CCR U;  1NJI V;  3I55 U;  1M1K V;  3G6E U;  1M90 V;  3ABO A;  3CPW T;  1YJW U;  3I56 U;  1VQ6 U;  1KD1 V;  3CC7 U;  1VQ9 U;  3CC2 U;  3G71 U;  3CXC T;  1VQN U;  1K9M V;  1VQM U;  5MLC Y;  1KQS T;  1VQO U;  3CMA U;  1VQ7 U;  1Q81 V;  2QA4 U;  1QVG T;  1VQ5 U;  1K73 V;  3CC4 U;  1W2B T;  3J7Z X;  1JJ2 T;  3CCJ U;  1YHQ U;  1N8R V;  5H1S Y;  1S72 U;  3CCQ U;  3CCM U;  1YJ9 U; 
#chains in the Genus database with same CATH homology
 3CPW T;  1YIJ U;  1YJW U;  1VQ8 U;  3CD6 U;  1Q82 V;  1KQS T;  3I56 U;  1K8A V;  1VQO U;  2QEX U;  3G4S U;  3CMA U;  1JJD A;  3OW2 T;  1VQL U;  1VQP U;  1VQ4 U;  1VQ7 U;  1Q81 V;  1VQ6 U;  2QA4 U;  1QVG T;  1VQ5 U;  1KD1 V;  3CC7 U;  2OTJ U;  3CCL U;  1K73 V;  1VQK U;  3CCU U;  3CCE U;  1YJN U;  3CC4 U;  1W2B T;  1Q7Y V;  1YIT U;  1JJ2 T;  3CME U;  1VQ9 U;  3CC2 U;  3G71 U;  1QVF T;  3CCJ U;  1Q86 V;  1KC8 V;  3CXC T;  3CCV U;  1YHQ U;  2OTL U;  1N8R V;  1VQN U;  5AN9 G;  3CCR U;  1YI2 U;  1S72 U;  1NJI V;  3I55 U;  1K9M V;  3CCQ U;  3CCM U;  1YJ9 U;  3G6E U;  1M1K V;  3CCS U;  1VQM U;  1M90 V;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1VQ4U

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations