2A02 | Genus

Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	16
sequence length	82
structure length	82
Chain Sequence	SQEWTLDIPAQSMNSALQALAKQTDTQLLYSPEDIGGLRSSALKGRHDLQSSLRILLQGTGLRYQIDGNTVTVTASAAAKDG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 82 atoms

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82 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Membrane protein, metal transport
source organism	Pseudomonas putida
publication title	Signal transduction pathway of TonB-dependent transporters. pubmed doi rcsb
molecule keywords	Ferric-pseudobactin 358 receptor
total genus	16
structure length	82
sequence length	82
ec nomenclature
pdb deposition date	2005-06-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF07660	STN	Secretin and TonB N terminus short domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.55.50.30	Alpha Beta	3-Layer(bab) Sandwich	Phage tail protein beta-alpha-beta fold	Phage tail protein beta-alpha-beta fold	2a02A01

4JTMA 3GR5A 2W16A 4M0HA 2D1UA 2W6TA 4M0NA 2O5PA 2W77A 4G08A 2A02A 2W76A 4AR0A 2W6UA 2IAHA 2M5JA 1ZZVA 2W78A 3EZJA 2W75A
chains in the Genus database with same CATH superfamily

2P5ZX 1WRUA 2L4WA 3D37A 4JTMA 3GR5A 2W16A 4M0HA 2D1UA 2W6TA 4M0NA 2WZPR 2O5PA 2X531 2W77A 4G08A 2A02A 3OV5A 3GS9A 4UHVA 4MTKA 2W76A 4AR0A 2W6UA 2M5JA 2Z6BD 3CDDA 2IAHA 3ADYA 1ZZVA 2W78A 3EZJA 1K28D 1WTHD 2W75A
chains in the Genus database with same CATH topology

2L4WA 4JTMA 3GR5A 2W16A 4M0HA 2D1UA 2W6TA 4M0NA 2WZPR 2O5PA 2X531 2W77A 4G08A 2A02A 3OV5A 3GS9A 2W76A 4AR0A 2W6UA 2M5JA 2Z6BD 2IAHA 3ADYA 1ZZVA 2W78A 3EZJA 1K28D 1WTHD 2W75A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4JTM A;  3GR5 A;  2W16 A;  4M0H A;  2D1U A;  2W6T A;  4M0N A;  2O5P A;  2W77 A;  4G08 A;  2A02 A;  2W76 A;  4AR0 A;  2W6U A;  2IAH A;  2M5J A;  1ZZV A;  2W78 A;  3EZJ A;  2W75 A; 
#chains in the Genus database with same CATH topology
 2P5Z X;  1WRU A;  2L4W A;  3D37 A;  4JTM A;  3GR5 A;  2W16 A;  4M0H A;  2D1U A;  2W6T A;  4M0N A;  2WZP R;  2O5P A;  2X53 1;  2W77 A;  4G08 A;  2A02 A;  3OV5 A;  3GS9 A;  4UHV A;  4MTK A;  2W76 A;  4AR0 A;  2W6U A;  2M5J A;  2Z6B D;  3CDD A;  2IAH A;  3ADY A;  1ZZV A;  2W78 A;  3EZJ A;  1K28 D;  1WTH D;  2W75 A; 
#chains in the Genus database with same CATH homology
 2L4W A;  4JTM A;  3GR5 A;  2W16 A;  4M0H A;  2D1U A;  2W6T A;  4M0N A;  2WZP R;  2O5P A;  2X53 1;  2W77 A;  4G08 A;  2A02 A;  3OV5 A;  3GS9 A;  2W76 A;  4AR0 A;  2W6U A;  2M5J A;  2Z6B D;  2IAH A;  3ADY A;  1ZZV A;  2W78 A;  3EZJ A;  1K28 D;  1WTH D;  2W75 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2A02A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations