The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
12
|
sequence length |
104
|
structure length |
104
|
Chain Sequence |
AQVNIAPGSLDKALNQYAAHSGFTLSVDASLTRGKQSNGLHGDYDVESGLQQLLDGSGLQVKPLGNNSWTLEPAPAPKEDALTVVGDWLGDARENDLEHHHHHH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Metal transport
|
| molecule keywords |
Iron(III) dicitrate transport protein fecA
|
| publication title |
Nuclear magnetic resonance solution structure of the periplasmic signalling domain of the TonB-dependent outer membrane transporter FecA from Escherichia coli
pubmed doi rcsb |
| source organism |
Escherichia coli
|
| total genus |
12
|
| structure length |
104
|
| sequence length |
104
|
| ec nomenclature | |
| pdb deposition date | 2005-09-01 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF07660 | STN | Secretin and TonB N terminus short domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(bab) Sandwich | Phage tail protein beta-alpha-beta fold | Phage tail protein beta-alpha-beta fold |
#chains in the Genus database with same CATH superfamily 2M5J A; 2O5P A; 2W16 A; 2W77 A; 2IAH A; 4G08 A; 1ZZV A; 3GR5 A; 2W6U A; 4JTM A; 2W6T A; 4AR0 A; 2W75 A; 4M0H A; 2W78 A; 3EZJ A; 4M0N A; 2A02 A; 2D1U A; 2W76 A; #chains in the Genus database with same CATH topology 2P5Z X; 1K28 D; 2M5J A; 2O5P A; 2W16 A; 2W77 A; 2IAH A; 2L4W A; 4G08 A; 1ZZV A; 2WZP R; 4MTK A; 3GR5 A; 2W6U A; 4JTM A; 3D37 A; 2Z6B D; 1WTH D; 2W6T A; 3OV5 A; 3GS9 A; 4AR0 A; 2W75 A; 4M0H A; 4UHV A; 1WRU A; 3ADY A; 2W78 A; 2X53 1; 3EZJ A; 4M0N A; 2A02 A; 2D1U A; 3CDD A; 2W76 A; #chains in the Genus database with same CATH homology 1K28 D; 2M5J A; 2O5P A; 2W16 A; 2W77 A; 2IAH A; 2L4W A; 4G08 A; 1ZZV A; 2WZP R; 3GR5 A; 2W6U A; 4JTM A; 2Z6B D; 1WTH D; 2W6T A; 3OV5 A; 3GS9 A; 4AR0 A; 2W75 A; 4M0H A; 3ADY A; 2W78 A; 2X53 1; 3EZJ A; 4M0N A; 2A02 A; 2D1U A; 2W76 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
