3CDDA

Crystal structure of prophage muso2, 43 kda tail protein from shewanella oneidensis
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
347
structure length
328
Chain Sequence
SEEIVLKAGGKIYQGWTKIGITRSLEAMSGAFDLEMTYKFLGNDAQYKAFIEPIKQGQACTVDIGGERVITGYVDDWVPSYDESTITISVSGRDKTADLVDCSIDYPSGQFNNQTLTQIADIVCKPFGIKVIVNTDVGEPFQRIQIEQGETPHELLARLAKQRGVLLTSDTFGNLVITRASKTKAGVSLILGDNVKAARGRFSWRQRFSKFTIKAAKADVTDSEIGRYRPLIIVNEEVTAEGAAKRGQWERQRSIGKSNMAEYTVTGWRIPQTGKLWNINTLVPVIDEIMGLDEEMLIASILFSEDDAGRLAVISVVRPDAMDIPAQI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Prophage MuSo2, 43 kDa tail protein
publication title Crystal structure of prophage MuSo2, 43 kDa tail protein from Shewanella oneidensis.
rcsb
source organism Shewanella oneidensis
total genus 77
structure length 328
sequence length 347
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2008-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05954 Phage_GPD Phage late control gene D protein (GPD)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.300.10 Mainly Beta Roll Phage tail proteins - horseshoe like beta roll fold Baseplate protein-like domain - beta roll fold 3cddA01
3.30.1920.10 Alpha Beta 2-Layer Sandwich Phage tail proteins - 2 layer sandwich fold Baseplate protein-like domains - 2 layer sandwich fold 3cddA03
3.55.50.10 Alpha Beta 3-Layer(bab) Sandwich Phage tail protein beta-alpha-beta fold Baseplate protein-like domains 3cddA02
1WRUA 3CDDA 4MTKA 4UHVA 2P5ZX 3D37A
chains in the Genus database with same CATH superfamily
2W78A 2O5PA 3CDDA 4MTKA 3GR5A 3GS9A 1WTHD 2W75A 2W77A 1K28D 1ZZVA 2W6UA 3EZJA 3ADYA 2WZPR 2X531 1WRUA 4M0NA 3OV5A 2D1UA 4G08A 2L4WA 2M5JA 2Z6BD 2IAHA 4JTMA 4M0HA 4AR0A 2W6TA 2W16A 4UHVA 2A02A 2W76A 2P5ZX 3D37A
chains in the Genus database with same CATH topology
1WRUA 3CDDA 4MTKA 4UHVA 2P5ZX 3D37A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WRU A;  3CDD A;  4MTK A;  4UHV A;  2P5Z X;  3D37 A; 
#chains in the Genus database with same CATH topology
 2W78 A;  2O5P A;  3CDD A;  4MTK A;  3GR5 A;  3GS9 A;  1WTH D;  2W75 A;  2W77 A;  1K28 D;  1ZZV A;  2W6U A;  3EZJ A;  3ADY A;  2WZP R;  2X53 1;  1WRU A;  4M0N A;  3OV5 A;  2D1U A;  4G08 A;  2L4W A;  2M5J A;  2Z6B D;  2IAH A;  4JTM A;  4M0H A;  4AR0 A;  2W6T A;  2W16 A;  4UHV A;  2A02 A;  2W76 A;  2P5Z X;  3D37 A; 
#chains in the Genus database with same CATH homology
 1WRU A;  3CDD A;  4MTK A;  4UHV A;  2P5Z X;  3D37 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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