4G08A

Crystal structure of the periplasmic domain of invg
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
140
structure length
140
Chain Sequence
GFVAKDDSLRTFFDAMALQLKEPVIVSKMAARKKITGNFEFHDPNALLEKLSLQLGLIWYFDGQAIYIYDASEMRNAVVSLRNVSLNEFNNFLKRSGLYNKNYPLRGDNRKGTFYVSGPPVYVDMVVNAATMMDKQNDGI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell invasion
molecule keywords Protein InvG
publication title A Refined Model of the Prototypical Salmonella SPI-1 T3SS Basal Body Reveals the Molecular Basis for Its Assembly.
pubmed doi rcsb
source organism Salmonella enterica subsp. enterica serovar typhimurium
total genus 40
structure length 140
sequence length 140
ec nomenclature
pdb deposition date 2012-07-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.120 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 4g08A02
3.55.50.30 Alpha Beta 3-Layer(bab) Sandwich Phage tail protein beta-alpha-beta fold Phage tail protein beta-alpha-beta fold 4g08A01
3EZJA 4M0NA 2A02A 4G08A 4AR0A 2W75A 2W6UA 4M0HA 2Y3MA 2W6TA 3OSSD 2M5JA 2IAHA 2W78A 2W16A 2D1UA 3GR5A 2W77A 4JTMA 4EC5A 2O5PA 4E9JA 2W76A 1ZZVA
chains in the Genus database with same CATH superfamily
1HNXH 2CTFA 2JA9A 1ZZJA 1J5KA 1DTJA 1VIGA 1XMOH 1X4MA 4LIJA 2CWHA 3JAMW 5FLXW 1I94H 4JI4H 1HNWH 2JZXA 3KDGA 4JV5H 4DV0H 4G08A 4NXNH 4AR0A 2VKCA 1S03G 2W6UA 2UU9H 2UXDH 2VQFH 1VBIA 1IBLH 4DR6H 3ADYA 4JI0H 2CTLA 1N36H 2O4CA 4AM3A 1KHMA 2LRRA 4JI1H 4JI2H 2Y3MA 2MJHA 3OSSD 1IBMH 4AQYH 4LF4H 3GS9A 4K0KH 5BR8H 2M6QA 4DR1H 2CPMA 4B3MH 1NXUA 3J7AK 4JVYA 1WRUA 2LTLA 4QMFB 4JYAH 2W16A 2W77A 1HR0H 4JTMA 4OX9H 4JI8H 1WTHD 2LTMA 1X9ZA 4H8AA 4LFCH 2O5PA 2HH2A 4OCHA 1MSZA 2UXBH 4OD6A 2P5ZX 4X66H 4MTKA 1HNZH 2L4WA 4DR3H 3I0PA 4B8TA 4PDBA 4M0NA 4LF9H 1J5EH 2UUAH 1X0AA 3T1HH 4JI3H 2CTJA 2A02A 2OPVA 4DV5H 2G8YA 2BA0A 1J4WA 1ZZKA 4NXMH 3VKEA 1S20A 2FFMA 1VIHA 4BA2I 2CTEA 2ZQEA 4BA1I 4YY3H 1XMQH 1DT4A 2Z0SA 4JI6H 4JI7H 2PY9A 1EC6A 1ODHA 1I6UA 2Z6BD 1ZZIA 1FJGH 1PQXA 3OTOH 3T1YH 2W6TA 2NN6G 4KHPH 1ZTGA 3OV5A 1F0XA 5LMNH 4X62H 3L7ZC 4LF5H 2W78A 1IBKH 3RF2A 4NZRM 1XRHA 4DV4H 2D1UA 4UHVA 1WHRA 5A2QW 2OPUA 1Z2IA 3J80W 1UG8A 2F4VH 4DR2H 3U1KA 4DR7H 3CDDA 2W76A 4FJSA 5LL6b 4DUYH 5K36G 4WALA 1V9NA 3EZJA 3D37A 2X531 4LF8H 2HHHH 1XNRH 2UUCH 2UXCH 2UUBH 4DV2H 1XNQH 3GKUA 2FMRA 2K1HA 2PT7G 1WTJA 4X65H 1TUAA 3AEVB 2W75A 2ANRA 4LF6H 1N32H 1AN7A 2CTMA 1N34H 2YQRA 1K28D 4LFAH 2JVZA 1X4NA 4DV3H 3KDKA 2M5JA 2E5LH 2IAHA 4B3RH 4X64H 4B3TH 4B8CD 4DUZH 4JI5H 1N33H 4M0HA 3GR5A 2M8WA 4EC5A 4GKKH 4YHHH 2CWFA 4E9JA 2DGRA 2JEBI 2QNDA 4IFDG 5LMUH 1FKAH 3QD7X 3UOEA 5IWAH 3J81W 1V8CA 4DV6H 4DV1H 4OO1G 4DR5H 4DR4H 5DT9A 4WANA 2X06A 3OETA 4JVHA 4AIMA 4GKJH 1WVNA 2PQUA 4LF7H 2LF0A 1SEIA 3NCVA 2BL5A 5C0XG 2FPHX 2E3UA 3GABA 2JE6I 2CPQA 2ANNA 3V69A 4DV7H 1K1GA 2D9IA 3SB1A 2VQEH 4B3SH 3FAUA 4LFBH 1WE8A 2HH3A 4NBQA 5JEAG 2A1SA 2WZPR 2CTKA 4FJUA 5IT9W 2ZM6H 2P2RA 2AXYA 1ZZVA 2JEAI 4NZTM
chains in the Genus database with same CATH topology
1HNXH 1XMOH 3JAMW 5FLXW 4JI4H 1HNWH 1I94H 4JV5H 3KDGA 4DV0H 4G08A 4NXNH 4AR0A 2VKCA 1S03G 2W6UA 2UU9H 2UXDH 2VQFH 4DR6H 1IBLH 3ADYA 4JI0H 1N36H 2O4CA 4JI1H 4JI2H 2Y3MA 3OSSD 1IBMH 4AQYH 4LF4H 3GS9A 4K0KH 5BR8H 4DR1H 4B3MH 3J7AK 2W16A 4JYAH 2W77A 1HR0H 4JTMA 4OX9H 4JI8H 1WTHD 1X9ZA 4LFCH 2O5PA 4OCHA 2UXBH 4OD6A 4X66H 1HNZH 2L4WA 4DR3H 4PDBA 4M0NA 4LF9H 1J5EH 2UUAH 3T1HH 4JI3H 2A02A 4DV5H 4NXMH 2ZQEA 4JI7H 4YY3H 4JI6H 1XMQH 1I6UA 4M0HA 2Z6BD 1ODHA 2W6TA 1FJGH 3T1YH 3OTOH 4KHPH 3OV5A 1F0XA 5LMNH 4X62H 4LF5H 2W78A 1IBKH 3RF2A 4NZRM 4DV4H 2D1UA 5A2QW 3J80W 2F4VH 4DR2H 4DR7H 2W76A 4DUYH 5LL6b 3EZJA 2X531 4LF8H 2HHHH 1XNRH 2UUCH 2UXCH 2UUBH 4DV2H 1XNQH 2PT7G 4X65H 2W75A 4LF6H 1N32H 1AN7A 1N34H 1K28D 4LFAH 4DV3H 3KDKA 2M5JA 2E5LH 2IAHA 4B3RH 4X64H 4B3TH 4B8CD 4DUZH 4JI5H 1N33H 3GR5A 4EC5A 4GKKH 4YHHH 4E9JA 5LMUH 1FKAH 3QD7X 5IWAH 3J81W 4DV6H 4DV1H 4DR5H 4DR4H 5DT9A 3OETA 4GKJH 4LF7H 2LF0A 1SEIA 3NCVA 2FPHX 3GABA 4DV7H 4LFBH 2D9IA 3SB1A 2VQEH 4B3SH 3FAUA 2WZPR 5IT9W 2ZM6H 1ZZVA 4NZTM
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EZJ A;  4M0N A;  2A02 A;  4G08 A;  4AR0 A;  2W75 A;  2W6U A;  4M0H A;  2Y3M A;  2W6T A;  3OSS D;  2M5J A;  2IAH A;  2W78 A;  2W16 A;  2D1U A;  3GR5 A;  2W77 A;  4JTM A;  4EC5 A;  2O5P A;  4E9J A;  2W76 A;  1ZZV A; 
#chains in the Genus database with same CATH topology
 1HNX H;  2CTF A;  2JA9 A;  1ZZJ A;  1J5K A;  1DTJ A;  1VIG A;  1XMO H;  1X4M A;  4LIJ A;  2CWH A;  3JAM W;  5FLX W;  1I94 H;  4JI4 H;  1HNW H;  2JZX A;  3KDG A;  4JV5 H;  4DV0 H;  4G08 A;  4NXN H;  4AR0 A;  2VKC A;  1S03 G;  2W6U A;  2UU9 H;  2UXD H;  2VQF H;  1VBI A;  1IBL H;  4DR6 H;  3ADY A;  4JI0 H;  2CTL A;  1N36 H;  2O4C A;  4AM3 A;  1KHM A;  2LRR A;  4JI1 H;  4JI2 H;  2Y3M A;  2MJH A;  3OSS D;  1IBM H;  4AQY H;  4LF4 H;  3GS9 A;  4K0K H;  5BR8 H;  2M6Q A;  4DR1 H;  2CPM A;  4B3M H;  1NXU A;  3J7A K;  4JVY A;  1WRU A;  2LTL A;  4QMF B;  4JYA H;  2W16 A;  2W77 A;  1HR0 H;  4JTM A;  4OX9 H;  4JI8 H;  1WTH D;  2LTM A;  1X9Z A;  4H8A A;  4LFC H;  2O5P A;  2HH2 A;  4OCH A;  1MSZ A;  2UXB H;  4OD6 A;  2P5Z X;  4X66 H;  4MTK A;  1HNZ H;  2L4W A;  4DR3 H;  3I0P A;  4B8T A;  4PDB A;  4M0N A;  4LF9 H;  1J5E H;  2UUA H;  1X0A A;  3T1H H;  4JI3 H;  2CTJ A;  2A02 A;  2OPV A;  4DV5 H;  2G8Y A;  2BA0 A;  1J4W A;  1ZZK A;  4NXM H;  3VKE A;  1S20 A;  2FFM A;  1VIH A;  4BA2 I;  2CTE A;  2ZQE A;  4BA1 I;  4YY3 H;  1XMQ H;  1DT4 A;  2Z0S A;  4JI6 H;  4JI7 H;  2PY9 A;  1EC6 A;  1ODH A;  1I6U A;  2Z6B D;  1ZZI A;  1FJG H;  1PQX A;  3OTO H;  3T1Y H;  2W6T A;  2NN6 G;  4KHP H;  1ZTG A;  3OV5 A;  1F0X A;  5LMN H;  4X62 H;  3L7Z C;  4LF5 H;  2W78 A;  1IBK H;  3RF2 A;  4NZR M;  1XRH A;  4DV4 H;  2D1U A;  4UHV A;  1WHR A;  5A2Q W;  2OPU A;  1Z2I A;  3J80 W;  1UG8 A;  2F4V H;  4DR2 H;  3U1K A;  4DR7 H;  3CDD A;  2W76 A;  4FJS A;  5LL6 b;  4DUY H;  5K36 G;  4WAL A;  1V9N A;  3EZJ A;  3D37 A;  2X53 1;  4LF8 H;  2HHH H;  1XNR H;  2UUC H;  2UXC H;  2UUB H;  4DV2 H;  1XNQ H;  3GKU A;  2FMR A;  2K1H A;  2PT7 G;  1WTJ A;  4X65 H;  1TUA A;  3AEV B;  2W75 A;  2ANR A;  4LF6 H;  1N32 H;  1AN7 A;  2CTM A;  1N34 H;  2YQR A;  1K28 D;  4LFA H;  2JVZ A;  1X4N A;  4DV3 H;  3KDK A;  2M5J A;  2E5L H;  2IAH A;  4B3R H;  4X64 H;  4B3T H;  4B8C D;  4DUZ H;  4JI5 H;  1N33 H;  4M0H A;  3GR5 A;  2M8W A;  4EC5 A;  4GKK H;  4YHH H;  2CWF A;  4E9J A;  2DGR A;  2JEB I;  2QND A;  4IFD G;  5LMU H;  1FKA H;  3QD7 X;  3UOE A;  5IWA H;  3J81 W;  1V8C A;  4DV6 H;  4DV1 H;  4OO1 G;  4DR5 H;  4DR4 H;  5DT9 A;  4WAN A;  2X06 A;  3OET A;  4JVH A;  4AIM A;  4GKJ H;  1WVN A;  2PQU A;  4LF7 H;  2LF0 A;  1SEI A;  3NCV A;  2BL5 A;  5C0X G;  2FPH X;  2E3U A;  3GAB A;  2JE6 I;  2CPQ A;  2ANN A;  3V69 A;  4DV7 H;  1K1G A;  2D9I A;  3SB1 A;  2VQE H;  4B3S H;  3FAU A;  4LFB H;  1WE8 A;  2HH3 A;  4NBQ A;  5JEA G;  2A1S A;  2WZP R;  2CTK A;  4FJU A;  5IT9 W;  2ZM6 H;  2P2R A;  2AXY A;  1ZZV A;  2JEA I;  4NZT M; 
#chains in the Genus database with same CATH homology
 1HNX H;  1XMO H;  3JAM W;  5FLX W;  4JI4 H;  1HNW H;  1I94 H;  4JV5 H;  3KDG A;  4DV0 H;  4G08 A;  4NXN H;  4AR0 A;  2VKC A;  1S03 G;  2W6U A;  2UU9 H;  2UXD H;  2VQF H;  4DR6 H;  1IBL H;  3ADY A;  4JI0 H;  1N36 H;  2O4C A;  4JI1 H;  4JI2 H;  2Y3M A;  3OSS D;  1IBM H;  4AQY H;  4LF4 H;  3GS9 A;  4K0K H;  5BR8 H;  4DR1 H;  4B3M H;  3J7A K;  2W16 A;  4JYA H;  2W77 A;  1HR0 H;  4JTM A;  4OX9 H;  4JI8 H;  1WTH D;  1X9Z A;  4LFC H;  2O5P A;  4OCH A;  2UXB H;  4OD6 A;  4X66 H;  1HNZ H;  2L4W A;  4DR3 H;  4PDB A;  4M0N A;  4LF9 H;  1J5E H;  2UUA H;  3T1H H;  4JI3 H;  2A02 A;  4DV5 H;  4NXM H;  2ZQE A;  4JI7 H;  4YY3 H;  4JI6 H;  1XMQ H;  1I6U A;  4M0H A;  2Z6B D;  1ODH A;  2W6T A;  1FJG H;  3T1Y H;  3OTO H;  4KHP H;  3OV5 A;  1F0X A;  5LMN H;  4X62 H;  4LF5 H;  2W78 A;  1IBK H;  3RF2 A;  4NZR M;  4DV4 H;  2D1U A;  5A2Q W;  3J80 W;  2F4V H;  4DR2 H;  4DR7 H;  2W76 A;  4DUY H;  5LL6 b;  3EZJ A;  2X53 1;  4LF8 H;  2HHH H;  1XNR H;  2UUC H;  2UXC H;  2UUB H;  4DV2 H;  1XNQ H;  2PT7 G;  4X65 H;  2W75 A;  4LF6 H;  1N32 H;  1AN7 A;  1N34 H;  1K28 D;  4LFA H;  4DV3 H;  3KDK A;  2M5J A;  2E5L H;  2IAH A;  4B3R H;  4X64 H;  4B3T H;  4B8C D;  4DUZ H;  4JI5 H;  1N33 H;  3GR5 A;  4EC5 A;  4GKK H;  4YHH H;  4E9J A;  5LMU H;  1FKA H;  3QD7 X;  5IWA H;  3J81 W;  4DV6 H;  4DV1 H;  4DR5 H;  4DR4 H;  5DT9 A;  3OET A;  4GKJ H;  4LF7 H;  2LF0 A;  1SEI A;  3NCV A;  2FPH X;  3GAB A;  4DV7 H;  4LFB H;  2D9I A;  3SB1 A;  2VQE H;  4B3S H;  3FAU A;  2WZP R;  5IT9 W;  2ZM6 H;  1ZZV A;  4NZT M; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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