The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
34
|
sequence length |
84
|
structure length |
84
|
Chain Sequence |
MKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAACRYHY
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Toxin
|
| molecule keywords |
Toxin yoeB
|
| publication title |
Conformational Change in the Catalytic Site of the Ribonuclease YoeB Toxin by YefM Antitoxin
pubmed doi rcsb |
| source organism |
Escherichia coli
|
| total genus |
34
|
| structure length |
84
|
| sequence length |
84
|
| chains with identical sequence |
B, C, D, E, F
|
| ec nomenclature | |
| pdb deposition date | 2005-07-04 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF06769 | YoeB_toxin | YoeB-like toxin of bacterial type II toxin-antitoxin system |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | YaeB-like fold | RelE-like |
#chains in the Genus database with same CATH superfamily 4YY3 Y; 3BPQ B; 4FXH A; 4MMG A; 5CEG B; 2A6R A; 5CZF C; 4LSY A; 2A6S A; 1WMI A; 4MMJ A; 4LS4 A; 2OTR A; 4PX8 A; 4NRN A; 5IXL A; 4Q2U B; 3G5O B; 4FXE D; 4MCX B; 2KC9 A; 3OEI C; 2A6Q E; 4FXI A; 4ML2 A; 2KHE A; 5CZE B; 4MCT B; 1Z8M A; 4ML0 B; 5IWH A; 4LTT A; 5CW7 B; 3KXE A; 2KC8 A; #chains in the Genus database with same CATH topology 4YY3 Y; 3BPQ B; 4FXH A; 2FHZ B; 4MMG A; 5CEG B; 2A6R A; 5CZF C; 4LSY A; 2A6S A; 1WMI A; 4MMJ A; 4LS4 A; 2OTR A; 3VJ7 A; 4PX8 A; 4FBD A; 4NRN A; 5IXL A; 4Q2U B; 3G5O B; 4FXE D; 4MCX B; 3HI2 B; 2KC9 A; 3OEI C; 2A6Q E; 3AO9 A; 4FXI A; 4ML2 A; 2KHE A; 5CZE B; 4MCT B; 1Z8M A; 4ML0 B; 2DJH A; 5IWH A; 4LTT A; 5CW7 B; 3KXE A; 1XQB A; 2DFX E; 2A8K A; 2PD0 A; 2KC8 A; #chains in the Genus database with same CATH homology 4YY3 Y; 3BPQ B; 4FXH A; 4MMG A; 5CEG B; 2A6R A; 5CZF C; 4LSY A; 2A6S A; 1WMI A; 4MMJ A; 4LS4 A; 2OTR A; 4PX8 A; 4NRN A; 5IXL A; 4Q2U B; 3G5O B; 4FXE D; 4MCX B; 2KC9 A; 3OEI C; 2A6Q E; 4FXI A; 4ML2 A; 2KHE A; 5CZE B; 4MCT B; 1Z8M A; 4ML0 B; 5IWH A; 4LTT A; 5CW7 B; 3KXE A; 2KC8 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
